X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
Temperature 293.0
Details PEG3350, NaSCN and NH4I

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 62.83 α = 90
b = 88.86 β = 103.08
c = 77.29 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS 2M -- 2016-08-07
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SLS BEAMLINE X06DA 0.9801 SLS X06DA

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.1 75.29 97.1 -- -- -- 3.8 -- 50000 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
-- -- -- -- -- -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.1 75.29 -- -- -- 45218 2344 98.35 -- 0.24018 0.23789 0.28607 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.1 2.155 -- 171 3309 0.382 0.374 -- 97.62
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 47.435
Anisotropic B[1][1] -0.81
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.37
Anisotropic B[2][2] -1.51
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 1.93
RMS Deviations
Key Refinement Restraint Deviation
r_gen_planes_other 0.001
r_angle_other_deg 0.975
r_mcbond_other 0.244
r_mcangle_it 0.462
r_dihedral_angle_2_deg 32.842
r_scangle_other 0.307
r_gen_planes_refined 0.005
r_chiral_restr 0.085
r_sphericity_bonded 77.525
r_long_range_B_refined 5.372
r_scbond_other 0.198
r_angle_refined_deg 1.249
r_dihedral_angle_3_deg 12.618
r_dihedral_angle_4_deg 15.905
r_long_range_B_other 5.372
r_mcangle_other 0.462
r_dihedral_angle_1_deg 6.613
r_scbond_it 0.198
r_mcbond_it 0.247
r_bond_other_d 0.002
r_bond_refined_d 0.007
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 6268
Nucleic Acid Atoms 0
Heterogen Atoms 228
Solvent Atoms 89

Software

Software
Software Name Purpose
REFMAC refinement version: 5.8.0155
XDS data reduction version: 1.0
Aimless data scaling version: 1.0
PHASER phasing version: 1.0