X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion
Temperature 293.0
Details 0-3% PEG, 1-6% glycerol, 30 mM magnesium chloride, 30 mM calcium chloride, 0.1M MES/0.1M imidazole

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 104.5 α = 90
b = 157.79 β = 90
c = 180.23 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS 2M -- 2012-09-12
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SLS BEAMLINE X06DA 1.0000 SLS X06DA

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.9 52.25 100.0 0.106 -- -- 13.3 -- 233651 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.9 1.95 99.8 3.209 -- 0.9 12.5 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
FOURIER SYNTHESIS 1.9 52.25 -- 1.99 -- 233651 11712 99.96 -- 0.1747 0.1729 0.208 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.8999 1.9215 -- 368 7292 0.342 0.3471 -- 99.0
X Ray Diffraction 1.9215 1.9441 -- 389 7308 0.3269 0.3491 -- 100.0
X Ray Diffraction 1.9441 1.9679 -- 364 7389 0.3089 0.3449 -- 100.0
X Ray Diffraction 1.9679 1.9928 -- 396 7281 0.2934 0.3191 -- 100.0
X Ray Diffraction 1.9928 2.019 -- 403 7337 0.2767 0.2934 -- 100.0
X Ray Diffraction 2.019 2.0467 -- 413 7344 0.261 0.2959 -- 100.0
X Ray Diffraction 2.0467 2.0759 -- 406 7324 0.2492 0.2811 -- 100.0
X Ray Diffraction 2.0759 2.1069 -- 416 7302 0.2401 0.2663 -- 100.0
X Ray Diffraction 2.1069 2.1398 -- 361 7379 0.2232 0.2613 -- 100.0
X Ray Diffraction 2.1398 2.1749 -- 391 7349 0.2154 0.2614 -- 100.0
X Ray Diffraction 2.1749 2.2124 -- 408 7292 0.2126 0.2553 -- 100.0
X Ray Diffraction 2.2124 2.2526 -- 369 7413 0.2 0.2327 -- 100.0
X Ray Diffraction 2.2526 2.2959 -- 394 7299 0.1919 0.2249 -- 100.0
X Ray Diffraction 2.2959 2.3428 -- 385 7400 0.1916 0.2274 -- 100.0
X Ray Diffraction 2.3428 2.3937 -- 370 7409 0.185 0.2268 -- 100.0
X Ray Diffraction 2.3937 2.4494 -- 408 7320 0.1732 0.2257 -- 100.0
X Ray Diffraction 2.4494 2.5107 -- 401 7365 0.1758 0.2241 -- 100.0
X Ray Diffraction 2.5107 2.5786 -- 368 7409 0.1726 0.2354 -- 100.0
X Ray Diffraction 2.5786 2.6544 -- 385 7347 0.1702 0.2243 -- 100.0
X Ray Diffraction 2.6544 2.7401 -- 366 7461 0.1726 0.2104 -- 100.0
X Ray Diffraction 2.7401 2.838 -- 355 7406 0.1698 0.2149 -- 100.0
X Ray Diffraction 2.838 2.9517 -- 409 7370 0.1708 0.2184 -- 100.0
X Ray Diffraction 2.9517 3.086 -- 383 7434 0.1649 0.2068 -- 100.0
X Ray Diffraction 3.086 3.2487 -- 388 7433 0.1681 0.2198 -- 100.0
X Ray Diffraction 3.2487 3.4522 -- 408 7426 0.1599 0.1943 -- 100.0
X Ray Diffraction 3.4522 3.7186 -- 409 7438 0.15 0.1834 -- 100.0
X Ray Diffraction 3.7186 4.0927 -- 399 7475 0.1351 0.1654 -- 100.0
X Ray Diffraction 4.0927 4.6846 -- 391 7526 0.1271 0.1583 -- 100.0
X Ray Diffraction 4.6846 5.9008 -- 400 7580 0.1475 0.1701 -- 100.0
X Ray Diffraction 5.9008 52.2697 -- 409 7831 0.1725 0.1977 -- 100.0
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.004
f_bond_d 0.005
f_chiral_restr 0.037
f_dihedral_angle_d 14.096
f_angle_d 0.912
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 17497
Nucleic Acid Atoms 0
Heterogen Atoms 256
Solvent Atoms 1567

Software

Software
Software Name Purpose
PHENIX refinement version: 1.9_1692
XDS data reduction
XSCALE data scaling
PHENIX phasing