X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion
Temperature 277.0
Details 6-12% PEG6000

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 146.01 α = 90
b = 112.69 β = 114.18
c = 90.81 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS3 S 6M -- 2015-03-19
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SLS BEAMLINE X10SA 0.97863 SLS X10SA

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
3.5 19.74 99.0 0.181 -- -- 6.76 -- 16932 -- -3.0 98.247
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
3.5 3.59 99.1 1.956 -- 1.05 -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
SAD 3.502 19.742 -- 1.37 -- 14170 712 83.74 -- 0.2471 0.2444 0.2977 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 3.5024 3.7711 -- 69 1279 0.3194 0.3492 -- 40.0
X Ray Diffraction 3.7711 4.1474 -- 125 2553 0.2796 0.3735 -- 80.0
X Ray Diffraction 4.1474 4.7403 -- 168 3184 0.2536 0.3334 -- 100.0
X Ray Diffraction 4.7403 5.9451 -- 184 3197 0.2679 0.3038 -- 100.0
X Ray Diffraction 5.9451 19.7426 -- 166 3245 0.1934 0.2286 -- 100.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 74.2897
RMS Deviations
Key Refinement Restraint Deviation
f_dihedral_angle_d 18.302
f_chiral_restr 0.037
f_plane_restr 0.003
f_bond_d 0.002
f_angle_d 0.63
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 6186
Nucleic Acid Atoms 0
Heterogen Atoms 0
Solvent Atoms 6

Software

Software
Software Name Purpose
PHENIX refinement version: 1.10_2155
PDB_EXTRACT data extraction version: 3.11
XSCALE data scaling
PHENIX phasing
XDS data reduction