X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 5.8
Temperature 291.0
Details 200NL FAB 10MG/ML IN 20 MM HEPES PH 7.5 REMARK 280 7.5, 150 MM NACL PLUS 200NL 30%W/V PEG 1K, 200MM KF, pH 5.8)

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 67.78 α = 90
b = 69.25 β = 90
c = 87.8 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS 6M TORROIDAL FOCUSSING MIRROR 2015-06-29
Diffraction Radiation
Monochromator Protocol
Si(111) SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ESRF BEAMLINE ID29 1.0000 ESRF ID29

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.88 54.37 99.4 0.076 -- 10.0 4.5 -- 34249 -- -- 36.6
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.88 1.95 97.7 0.8 -- 1.4 3.2 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.88 47.38 -- -- -- 32346 1659 99.14 -- 0.17819 0.17623 0.21505 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.88 1.929 -- 122 2299 0.33 0.326 -- 96.69
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 35.896
Anisotropic B[1][1] 1.75
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] -0.56
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -1.2
RMS Deviations
Key Refinement Restraint Deviation
r_mcangle_it 3.049
r_dihedral_angle_3_deg 12.886
r_gen_planes_other 0.002
r_dihedral_angle_4_deg 22.747
r_angle_refined_deg 1.355
r_long_range_B_other 6.364
r_angle_other_deg 0.864
r_scbond_other 3.018
r_dihedral_angle_2_deg 37.013
r_mcbond_it 2.076
r_chiral_restr 0.08
r_mcangle_other 3.051
r_bond_other_d 0.002
r_scbond_it 3.018
r_dihedral_angle_1_deg 6.53
r_gen_planes_refined 0.005
r_scangle_other 4.477
r_long_range_B_refined 6.392
r_bond_refined_d 0.009
r_mcbond_other 2.071
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 3280
Nucleic Acid Atoms 0
Heterogen Atoms 97
Solvent Atoms 221

Software

Software
Software Name Purpose
REFMAC refinement version: 5.8.0135
XDS data reduction
SCALA data scaling
BALBES phasing