X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 7.2
Temperature 292.0
Details Tris, NaCl, PEG 4000, ZnCl2

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 116.86 α = 90
b = 68.14 β = 96.57
c = 60.41 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 80
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD MARMOSAIC 225 mm CCD -- 2015-03-25
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 22-BM 1.00 APS 22-BM

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.72 34.07 100.0 -- -- -- 3.7 -- 50230 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
-- -- -- -- -- -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
-- 1.716 34.07 -- 1.34 -- 50218 2000 99.45 -- 0.1663 0.1648 0.2036 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.716 1.7585 -- 134 3230 0.2453 0.2804 -- 93.0
X Ray Diffraction 1.7585 1.806 -- 142 3425 0.2292 0.2576 -- 100.0
X Ray Diffraction 1.806 1.8592 -- 143 3443 0.2172 0.2481 -- 100.0
X Ray Diffraction 1.8592 1.9192 -- 143 3430 0.2246 0.2903 -- 100.0
X Ray Diffraction 1.9192 1.9878 -- 143 3470 0.1954 0.2474 -- 100.0
X Ray Diffraction 1.9878 2.0673 -- 143 3450 0.1749 0.2144 -- 100.0
X Ray Diffraction 2.0673 2.1614 -- 144 3453 0.165 0.1884 -- 100.0
X Ray Diffraction 2.1614 2.2754 -- 142 3442 0.1665 0.2151 -- 100.0
X Ray Diffraction 2.2754 2.4179 -- 144 3460 0.1554 0.2087 -- 100.0
X Ray Diffraction 2.4179 2.6045 -- 144 3475 0.1562 0.1727 -- 100.0
X Ray Diffraction 2.6045 2.8665 -- 143 3439 0.1709 0.2144 -- 100.0
X Ray Diffraction 2.8665 3.281 -- 143 3463 0.1667 0.204 -- 100.0
X Ray Diffraction 3.281 4.1325 -- 145 3485 0.1495 0.1859 -- 100.0
X Ray Diffraction 4.1325 34.07 -- 147 3553 0.1509 0.1925 -- 100.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 43.4252
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.007
f_dihedral_angle_d 11.046
f_chiral_restr 0.055
f_bond_d 0.015
f_angle_d 1.249
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 3289
Nucleic Acid Atoms 0
Heterogen Atoms 3
Solvent Atoms 390

Software

Software
Software Name Purpose
PHENIX refinement version: 1.9_1692
PDB_EXTRACT data extraction version: 3.20
HKL-2000 data reduction
HKL-2000 data scaling
REFMAC phasing