X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
Temperature 293.0
Details 0.2 M Ammonium formate, 20% PEG 3350

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 73.11 α = 90
b = 82.93 β = 90
c = 93.26 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CMOS RDI CMOS_8M -- 2016-06-15
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ALS BEAMLINE 4.2.2 1.00004 ALS 4.2.2

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.14 61.97 79.1 0.128 -- -- 27.4 -- 150169 -- -3.0 14.12
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.14 1.16 9.4 -- -- -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
-- 1.4 61.97 -- 1.35 -- 111945 5614 99.97 -- 0.1498 0.1483 0.1787 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.4 1.4159 -- 187 3485 0.199 0.2605 -- 100.0
X Ray Diffraction 1.4159 1.4326 -- 180 3534 0.1909 0.2473 -- 100.0
X Ray Diffraction 1.4326 1.45 -- 192 3467 0.1816 0.2392 -- 100.0
X Ray Diffraction 1.45 1.4684 -- 193 3499 0.1814 0.2296 -- 100.0
X Ray Diffraction 1.4684 1.4877 -- 189 3527 0.174 0.2402 -- 100.0
X Ray Diffraction 1.4877 1.5081 -- 194 3510 0.1585 0.2159 -- 100.0
X Ray Diffraction 1.5081 1.5296 -- 197 3486 0.1498 0.2069 -- 100.0
X Ray Diffraction 1.5296 1.5525 -- 183 3503 0.1529 0.2179 -- 100.0
X Ray Diffraction 1.5525 1.5767 -- 187 3523 0.1497 0.2034 -- 100.0
X Ray Diffraction 1.5767 1.6026 -- 184 3540 0.1377 0.1822 -- 100.0
X Ray Diffraction 1.6026 1.6302 -- 188 3499 0.132 0.1795 -- 100.0
X Ray Diffraction 1.6302 1.6599 -- 168 3528 0.1348 0.2025 -- 100.0
X Ray Diffraction 1.6599 1.6918 -- 179 3522 0.135 0.1578 -- 100.0
X Ray Diffraction 1.6918 1.7263 -- 178 3531 0.1352 0.1722 -- 100.0
X Ray Diffraction 1.7263 1.7639 -- 177 3553 0.1344 0.1809 -- 100.0
X Ray Diffraction 1.7639 1.8049 -- 170 3534 0.1415 0.1765 -- 100.0
X Ray Diffraction 1.8049 1.8501 -- 170 3517 0.1419 0.1827 -- 100.0
X Ray Diffraction 1.8501 1.9001 -- 176 3546 0.1478 0.1906 -- 100.0
X Ray Diffraction 1.9001 1.956 -- 214 3514 0.1389 0.1632 -- 100.0
X Ray Diffraction 1.956 2.0191 -- 186 3533 0.1375 0.1554 -- 100.0
X Ray Diffraction 2.0191 2.0913 -- 202 3547 0.1359 0.1637 -- 100.0
X Ray Diffraction 2.0913 2.175 -- 196 3510 0.1406 0.1647 -- 100.0
X Ray Diffraction 2.175 2.274 -- 179 3571 0.1391 0.1751 -- 100.0
X Ray Diffraction 2.274 2.3939 -- 175 3568 0.1552 0.1987 -- 100.0
X Ray Diffraction 2.3939 2.5439 -- 208 3548 0.158 0.2019 -- 100.0
X Ray Diffraction 2.5439 2.7403 -- 193 3569 0.163 0.1715 -- 100.0
X Ray Diffraction 2.7403 3.0161 -- 176 3616 0.1613 0.1816 -- 100.0
X Ray Diffraction 3.0161 3.4525 -- 188 3620 0.1486 0.1631 -- 100.0
X Ray Diffraction 3.4525 4.3496 -- 207 3632 0.1392 0.1568 -- 100.0
X Ray Diffraction 4.3496 62.0328 -- 198 3799 0.1484 0.1776 -- 100.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 20.941
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.006
f_angle_d 0.943
f_chiral_restr 0.085
f_bond_d 0.006
f_dihedral_angle_d 16.321
Coordinate Error
Parameter Value
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 4103
Nucleic Acid Atoms 0
Heterogen Atoms 2
Solvent Atoms 1010

Software

Software
Software Name Purpose
XSCALE data scaling
PHENIX refinement version: 1.10_2155
PDB_EXTRACT data extraction version: 3.20
XDS data reduction
PHASER phasing