X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
Temperature 289.0
Details 0.01 M Sodium citrate,33% PEG 6000,

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 47.02 α = 90
b = 71.05 β = 90
c = 71.82 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315r -- 2014-11-24
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 19-ID 0.97924 APS 19-ID

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2 50 99.4 0.058 -- 38.0 11.3 -- 16344 -- -- 24.07
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.0 2.03 93.1 0.893 -- -- 8.4 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
SAD 2.016 39.211 -- 1.34 -- 15279 1411 91.45 -- 0.1933 0.1909 0.2379 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.0162 2.0883 -- 81 1365 0.2344 0.2718 -- 47.0
X Ray Diffraction 2.0883 2.1719 -- 105 2188 0.2528 0.305 -- 75.0
X Ray Diffraction 2.1719 2.2707 -- 144 2742 0.2458 0.3416 -- 94.0
X Ray Diffraction 2.2707 2.3904 -- 151 2912 0.2291 0.2793 -- 100.0
X Ray Diffraction 2.3904 2.5401 -- 154 2909 0.2238 0.2424 -- 100.0
X Ray Diffraction 2.5401 2.7362 -- 152 2920 0.2197 0.3145 -- 100.0
X Ray Diffraction 2.7362 3.0115 -- 160 2889 0.2093 0.2497 -- 100.0
X Ray Diffraction 3.0115 3.447 -- 153 2923 0.1909 0.282 -- 100.0
X Ray Diffraction 3.447 4.342 -- 173 2892 0.1533 0.194 -- 100.0
X Ray Diffraction 4.342 39.2184 -- 138 2903 0.1523 0.1642 -- 99.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 34.5078
RMS Deviations
Key Refinement Restraint Deviation
f_dihedral_angle_d 10.244
f_plane_restr 0.004
f_bond_d 0.003
f_angle_d 0.658
f_chiral_restr 0.032
Coordinate Error
Parameter Value
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 2010
Nucleic Acid Atoms 0
Heterogen Atoms 0
Solvent Atoms 130

Software

Software
Software Name Purpose
SCALEPACK data scaling
PHENIX refinement version: dev_2056
PDB_EXTRACT data extraction version: 3.20
HKL-3000 data reduction
HKL-3000 phasing