X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 5.5
Temperature 293.0
Details 0.1M sodium acetate, pH 5.5, 25% (w/v) PEG-400 and 11% (w/v) PEG-8000

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 78.79 α = 90
b = 103.76 β = 90
c = 59.98 γ = 90
Symmetry
Space Group P 21 21 2

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD MARMOSAIC 300 mm CCD -- 2014-10-30
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 22-ID 1 APS 22-ID

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.9 50 99.0 -- -- -- 6.8 -- 25791 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
-- -- -- -- -- -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.904 35.124 -- 1.35 -- 25791 1249 65.69 -- 0.197 0.1952 0.2312 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.9038 1.98 -- 7 147 0.342 0.4593 -- 4.0
X Ray Diffraction 1.98 2.0701 -- 28 549 0.2545 0.4049 -- 13.0
X Ray Diffraction 2.0701 2.1792 -- 60 1392 0.228 0.2939 -- 34.0
X Ray Diffraction 2.1792 2.3157 -- 142 2387 0.2381 0.2892 -- 58.0
X Ray Diffraction 2.3157 2.4945 -- 167 3283 0.2386 0.2337 -- 80.0
X Ray Diffraction 2.4945 2.7454 -- 187 4073 0.2398 0.2683 -- 98.0
X Ray Diffraction 2.7454 3.1424 -- 207 4159 0.2171 0.2917 -- 100.0
X Ray Diffraction 3.1424 3.9583 -- 211 4207 0.1854 0.2094 -- 100.0
X Ray Diffraction 3.9583 35.13 -- 240 4345 0.1682 0.2034 -- 100.0
RMS Deviations
Key Refinement Restraint Deviation
f_angle_d 0.77
f_chiral_restr 0.049
f_dihedral_angle_d 11.402
f_plane_restr 0.005
f_bond_d 0.004
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 3352
Nucleic Acid Atoms 0
Heterogen Atoms 24
Solvent Atoms 143

Software

Software
Software Name Purpose
PHENIX refinement version: (1.10_2155: ???)
PDB_EXTRACT data extraction version: 3.20
HKL-2000 data reduction
HKL-2000 data scaling
PHASER phasing