X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 5.5
Temperature 293.0
Details PEG 3350, lithium sulfate, glycerol, bis-tris

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 73.16 α = 90
b = 141.71 β = 90
c = 213.78 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS 6M-F -- 2014-02-06
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 24-ID-C 1.731600 APS 24-ID-C

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.08 70 99.7 0.044 -- -- 3.5 -- 223208 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.08 2.17 66.4 0.559 -- 1.5 2.6 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
FOURIER SYNTHESIS 2.08 69.22 -- 1.18 -- 223208 11177 86.27 -- 0.18 0.1783 0.2127 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.0777 2.1013 -- 147 3017 0.3071 0.36 -- 37.0
X Ray Diffraction 2.1013 2.1261 -- 231 4245 0.3036 0.3417 -- 52.0
X Ray Diffraction 2.1261 2.152 -- 265 5234 0.2904 0.3119 -- 63.0
X Ray Diffraction 2.152 2.1792 -- 326 6210 0.2944 0.3271 -- 77.0
X Ray Diffraction 2.1792 2.2079 -- 319 7008 0.2884 0.3042 -- 85.0
X Ray Diffraction 2.2079 2.2382 -- 395 6979 0.2766 0.3209 -- 85.0
X Ray Diffraction 2.2382 2.2701 -- 365 7086 0.274 0.299 -- 87.0
X Ray Diffraction 2.2701 2.304 -- 382 7179 0.2617 0.3018 -- 88.0
X Ray Diffraction 2.304 2.34 -- 409 7334 0.2539 0.2887 -- 89.0
X Ray Diffraction 2.34 2.3784 -- 391 7319 0.2493 0.2855 -- 89.0
X Ray Diffraction 2.3784 2.4194 -- 329 7126 0.2231 0.2875 -- 86.0
X Ray Diffraction 2.4194 2.4634 -- 450 7383 0.2176 0.2485 -- 91.0
X Ray Diffraction 2.4634 2.5108 -- 392 7583 0.2135 0.2468 -- 92.0
X Ray Diffraction 2.5108 2.562 -- 377 7551 0.2023 0.2536 -- 93.0
X Ray Diffraction 2.562 2.6178 -- 409 7702 0.1945 0.2353 -- 93.0
X Ray Diffraction 2.6178 2.6787 -- 413 7421 0.1975 0.2481 -- 92.0
X Ray Diffraction 2.6787 2.7456 -- 376 7672 0.2138 0.274 -- 93.0
X Ray Diffraction 2.7456 2.8199 -- 411 7239 0.2115 0.2532 -- 88.0
X Ray Diffraction 2.8199 2.9029 -- 435 7653 0.2045 0.2501 -- 94.0
X Ray Diffraction 2.9029 2.9966 -- 408 7675 0.1973 0.24 -- 94.0
X Ray Diffraction 2.9966 3.1037 -- 407 7683 0.1973 0.2494 -- 94.0
X Ray Diffraction 3.1037 3.2279 -- 380 7586 0.1994 0.2272 -- 93.0
X Ray Diffraction 3.2279 3.3748 -- 365 7564 0.1829 0.2333 -- 92.0
X Ray Diffraction 3.3748 3.5527 -- 374 7166 0.1767 0.2152 -- 87.0
X Ray Diffraction 3.5527 3.7753 -- 389 7634 0.1579 0.1931 -- 93.0
X Ray Diffraction 3.7753 4.0668 -- 433 7575 0.1407 0.1715 -- 93.0
X Ray Diffraction 4.0668 4.476 -- 420 7501 0.124 0.1434 -- 92.0
X Ray Diffraction 4.476 5.1235 -- 403 7292 0.1236 0.1481 -- 89.0
X Ray Diffraction 5.1235 6.4543 -- 359 7801 0.1527 0.1901 -- 95.0
X Ray Diffraction 6.4543 69.2581 -- 417 7613 0.1521 0.1712 -- 93.0
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.003
f_bond_d 0.04
f_angle_d 0.496
f_chiral_restr 0.043
f_dihedral_angle_d 16.086
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 14294
Nucleic Acid Atoms 0
Heterogen Atoms 85
Solvent Atoms 579

Software

Software
Software Name Purpose
PHENIX refinement version: 1.10_2155
XDS data reduction
Aimless data scaling
PHENIX phasing