X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 9.5
Temperature 291.0
Details 0.2M MgCl2, 0.1M TrisHCl pH9.5, 20% (w/v) PEG4000

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 102.49 α = 90
b = 44.36 β = 99.92
c = 64.31 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS 2M-F -- 2013-08-23
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SLS BEAMLINE X06DA 1.00 SLS X06DA

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.5 43.28 96.0 0.05 -- -- 3.3 -- 44122 -- -- 20.54
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.499 1.553 97.0 -- -- 1.03 3.2 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
-- 1.499 43.281 -- 1.35 -- 44049 2221 96.02 -- 0.1668 0.1652 0.196 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.4993 1.5319 -- 135 2570 0.3131 0.3424 -- 95.0
X Ray Diffraction 1.5319 1.5675 -- 143 2666 0.2772 0.3032 -- 100.0
X Ray Diffraction 1.5675 1.6067 -- 142 2696 0.2557 0.2807 -- 100.0
X Ray Diffraction 1.6067 1.6501 -- 145 2700 0.2447 0.2803 -- 100.0
X Ray Diffraction 1.6501 1.6987 -- 145 2719 0.2233 0.264 -- 100.0
X Ray Diffraction 1.6987 1.7535 -- 165 2644 0.209 0.2656 -- 100.0
X Ray Diffraction 1.7535 1.8162 -- 142 2721 0.1871 0.2131 -- 100.0
X Ray Diffraction 1.8162 1.8889 -- 134 2706 0.1857 0.244 -- 100.0
X Ray Diffraction 1.8889 1.9749 -- 102 1948 0.1921 0.1989 -- 72.0
X Ray Diffraction 1.9749 2.079 -- 152 2700 0.1613 0.1931 -- 99.0
X Ray Diffraction 2.079 2.2093 -- 134 2714 0.1539 0.181 -- 100.0
X Ray Diffraction 2.2093 2.3798 -- 116 2272 0.1627 0.1936 -- 83.0
X Ray Diffraction 2.3798 2.6193 -- 132 2739 0.151 0.2071 -- 99.0
X Ray Diffraction 2.6193 2.9982 -- 145 2710 0.1521 0.1659 -- 99.0
X Ray Diffraction 2.9982 3.7771 -- 122 2559 0.1467 0.1694 -- 93.0
X Ray Diffraction 3.7771 43.2991 -- 167 2764 0.1446 0.1777 -- 98.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 29.84
RMS Deviations
Key Refinement Restraint Deviation
f_bond_d 0.01
f_chiral_restr 0.079
f_dihedral_angle_d 20.5
f_plane_restr 0.007
f_angle_d 1.1
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 2198
Nucleic Acid Atoms 0
Heterogen Atoms 33
Solvent Atoms 273

Software

Software
Software Name Purpose
PHENIX refinement version: (dev_2341: ???)
XDS data reduction
XDS data scaling