X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 5
Temperature 277.0
Details 0.1 M sodium citrate, 7% PEG 3350, 0.15 M NaCl

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 262.42 α = 90
b = 103.3 β = 117.47
c = 178.47 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315 -- 2012-12-08
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ALS BEAMLINE 8.2.1 1.0 ALS 8.2.1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.3 50 99.8 0.091 0.106 -- 3.6 -- 187452 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.3 2.34 98.9 0.574 -- 1.7 3.1 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.3 49.104 -- 1.34 -- 187452 9401 99.8 -- 0.1901 0.1875 0.2394 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.3 2.3261 -- 293 5829 0.2432 0.327 -- 99.0
X Ray Diffraction 2.3261 2.3535 -- 294 5951 0.251 0.3331 -- 99.0
X Ray Diffraction 2.3535 2.3822 -- 299 5843 0.2432 0.2946 -- 99.0
X Ray Diffraction 2.3822 2.4124 -- 319 5900 0.2327 0.2887 -- 100.0
X Ray Diffraction 2.4124 2.4441 -- 294 5939 0.2363 0.3087 -- 100.0
X Ray Diffraction 2.4441 2.4776 -- 302 5951 0.2303 0.2844 -- 100.0
X Ray Diffraction 2.4776 2.513 -- 336 5910 0.227 0.3105 -- 100.0
X Ray Diffraction 2.513 2.5505 -- 315 5877 0.2151 0.2704 -- 100.0
X Ray Diffraction 2.5505 2.5903 -- 320 5886 0.2189 0.2777 -- 100.0
X Ray Diffraction 2.5903 2.6328 -- 295 5978 0.2218 0.3005 -- 100.0
X Ray Diffraction 2.6328 2.6782 -- 324 5853 0.2303 0.2978 -- 100.0
X Ray Diffraction 2.6782 2.7269 -- 344 5917 0.2294 0.2605 -- 100.0
X Ray Diffraction 2.7269 2.7793 -- 336 5894 0.2213 0.2727 -- 100.0
X Ray Diffraction 2.7793 2.8361 -- 298 5938 0.2303 0.2783 -- 100.0
X Ray Diffraction 2.8361 2.8977 -- 325 5944 0.2154 0.2796 -- 100.0
X Ray Diffraction 2.8977 2.9651 -- 296 5911 0.2092 0.2818 -- 100.0
X Ray Diffraction 2.9651 3.0393 -- 322 5974 0.2182 0.2812 -- 100.0
X Ray Diffraction 3.0393 3.1214 -- 313 5916 0.2124 0.2852 -- 100.0
X Ray Diffraction 3.1214 3.2133 -- 313 5954 0.212 0.2628 -- 100.0
X Ray Diffraction 3.2133 3.3169 -- 335 5883 0.1929 0.2639 -- 100.0
X Ray Diffraction 3.3169 3.4355 -- 319 5990 0.1932 0.255 -- 100.0
X Ray Diffraction 3.4355 3.573 -- 329 5888 0.1805 0.2391 -- 100.0
X Ray Diffraction 3.573 3.7355 -- 308 5919 0.1725 0.2308 -- 100.0
X Ray Diffraction 3.7355 3.9324 -- 321 5951 0.167 0.205 -- 100.0
X Ray Diffraction 3.9324 4.1787 -- 304 5937 0.1596 0.2053 -- 100.0
X Ray Diffraction 4.1787 4.5011 -- 315 5979 0.14 0.1836 -- 100.0
X Ray Diffraction 4.5011 4.9537 -- 300 6002 0.1352 0.184 -- 100.0
X Ray Diffraction 4.9537 5.6696 -- 319 5980 0.1597 0.1964 -- 100.0
X Ray Diffraction 5.6696 7.1396 -- 310 6026 0.174 0.2206 -- 100.0
X Ray Diffraction 7.1396 49.1155 -- 303 6131 0.1824 0.2028 -- 99.0
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.005
f_chiral_restr 0.046
f_bond_d 0.009
f_angle_d 1.158
f_dihedral_angle_d 14.374
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 26060
Nucleic Acid Atoms 0
Heterogen Atoms 4
Solvent Atoms 1581

Software

Software
Software Name Purpose
PHENIX refinement version: dev_1760
Coot model building
PHASER phasing
HKL-2000 data reduction
HKL-2000 data scaling