X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 6
Temperature 293.0
Details 1.0M K/Na tartrate 100mM MES pH 6.0

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 118.75 α = 90
b = 154.58 β = 90
c = 153.8 γ = 90
Symmetry
Space Group C 2 2 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315r -- 2014-12-10
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ALS BEAMLINE 5.0.1 0.97741 ALS 5.0.1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.4 50 96.6 0.052 -- -- 5.5 -- 58564 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.4 2.45 98.2 0.63 -- 2.4 5.5 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
-- 2.402 47.268 -- 1.34 -- 58564 2277 54.87 -- 0.2068 0.2046 0.2614 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.4019 2.4541 -- 102 2522 0.2701 0.3708 -- 39.0
X Ray Diffraction 2.4541 2.5112 -- 107 2661 0.2709 0.3189 -- 42.0
X Ray Diffraction 2.5112 2.574 -- 115 2853 0.2688 0.3379 -- 44.0
X Ray Diffraction 2.574 2.6436 -- 122 2996 0.273 0.3605 -- 47.0
X Ray Diffraction 2.6436 2.7214 -- 127 3124 0.2839 0.3171 -- 49.0
X Ray Diffraction 2.7214 2.8092 -- 128 3171 0.283 0.378 -- 49.0
X Ray Diffraction 2.8092 2.9096 -- 129 3193 0.2679 0.3846 -- 50.0
X Ray Diffraction 2.9096 3.0261 -- 131 3237 0.2638 0.346 -- 50.0
X Ray Diffraction 3.0261 3.1637 -- 129 3203 0.2656 0.3105 -- 50.0
X Ray Diffraction 3.1637 3.3305 -- 130 3201 0.2479 0.3036 -- 50.0
X Ray Diffraction 3.3305 3.5391 -- 130 3210 0.2359 0.2908 -- 50.0
X Ray Diffraction 3.5391 3.8123 -- 132 3275 0.2102 0.2593 -- 51.0
X Ray Diffraction 3.8123 4.1957 -- 154 3855 0.1798 0.2305 -- 60.0
X Ray Diffraction 4.1957 4.8023 -- 181 4589 0.1595 0.2184 -- 72.0
X Ray Diffraction 4.8023 6.0484 -- 235 5553 0.1619 0.2312 -- 87.0
X Ray Diffraction 6.0484 47.2772 -- 225 5644 0.1569 0.1884 -- 88.0
RMS Deviations
Key Refinement Restraint Deviation
f_bond_d 0.009
f_angle_d 1.205
f_plane_restr 0.007
f_dihedral_angle_d 17.2
f_chiral_restr 0.046
Coordinate Error
Parameter Value
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 7689
Nucleic Acid Atoms 0
Heterogen Atoms 27
Solvent Atoms 163

Software

Software
Software Name Purpose
PHENIX refinement version: 1.9_1692
HKL-2000 data reduction
HKL-2000 data scaling
PHENIX phasing