X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion
pH 6.7
Temperature 293.0
Details 6% PEG 4K, 4% glycerol, 30 mM MgCl2, 30 mM CaCl2, 100 mM MES/Imidazole

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 104.25 α = 90
b = 156.32 β = 90
c = 180.61 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS 6M -- 2014-05-19
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SLS BEAMLINE X06SA 1.0000 SLS X06SA

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.39 49.5 99.6 -- -- -- 7.0 -- 116285 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.39 2.54 97.7 2.064 -- 0.95 6.97 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
-- 2.393 49.457 -- 1.34 -- 116285 5815 99.66 -- 0.1707 0.1687 0.2084 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.3935 2.4207 -- 175 3323 0.3498 0.3722 -- 90.0
X Ray Diffraction 2.4207 2.4492 -- 189 3608 0.302 0.3709 -- 100.0
X Ray Diffraction 2.4492 2.479 -- 194 3691 0.2877 0.3285 -- 100.0
X Ray Diffraction 2.479 2.5104 -- 192 3637 0.2794 0.3247 -- 100.0
X Ray Diffraction 2.5104 2.5434 -- 195 3699 0.2644 0.339 -- 100.0
X Ray Diffraction 2.5434 2.5783 -- 190 3608 0.2442 0.2902 -- 100.0
X Ray Diffraction 2.5783 2.6151 -- 193 3664 0.2275 0.2861 -- 100.0
X Ray Diffraction 2.6151 2.6541 -- 192 3663 0.2256 0.2584 -- 100.0
X Ray Diffraction 2.6541 2.6956 -- 192 3644 0.2227 0.2758 -- 100.0
X Ray Diffraction 2.6956 2.7398 -- 192 3651 0.2152 0.2565 -- 100.0
X Ray Diffraction 2.7398 2.787 -- 193 3658 0.2081 0.2561 -- 100.0
X Ray Diffraction 2.787 2.8377 -- 194 3686 0.2002 0.2304 -- 100.0
X Ray Diffraction 2.8377 2.8923 -- 195 3709 0.2027 0.2334 -- 100.0
X Ray Diffraction 2.8923 2.9513 -- 191 3633 0.2053 0.2532 -- 100.0
X Ray Diffraction 2.9513 3.0155 -- 193 3657 0.1818 0.2487 -- 100.0
X Ray Diffraction 3.0155 3.0856 -- 194 3678 0.1808 0.2326 -- 100.0
X Ray Diffraction 3.0856 3.1628 -- 193 3677 0.1736 0.2192 -- 100.0
X Ray Diffraction 3.1628 3.2483 -- 195 3696 0.1759 0.2018 -- 100.0
X Ray Diffraction 3.2483 3.3438 -- 193 3677 0.1777 0.2314 -- 100.0
X Ray Diffraction 3.3438 3.4517 -- 194 3687 0.172 0.2236 -- 100.0
X Ray Diffraction 3.4517 3.5751 -- 193 3672 0.1712 0.2257 -- 100.0
X Ray Diffraction 3.5751 3.7182 -- 196 3711 0.1612 0.2157 -- 100.0
X Ray Diffraction 3.7182 3.8873 -- 195 3712 0.1469 0.1702 -- 100.0
X Ray Diffraction 3.8873 4.0922 -- 195 3708 0.1438 0.1861 -- 100.0
X Ray Diffraction 4.0922 4.3484 -- 197 3742 0.1391 0.1811 -- 100.0
X Ray Diffraction 4.3484 4.6839 -- 195 3708 0.1268 0.1648 -- 100.0
X Ray Diffraction 4.6839 5.1549 -- 197 3734 0.1381 0.17 -- 100.0
X Ray Diffraction 5.1549 5.8997 -- 199 3773 0.1644 0.2136 -- 100.0
X Ray Diffraction 5.8997 7.429 -- 200 3814 0.171 0.211 -- 100.0
X Ray Diffraction 7.429 49.4677 -- 209 3950 0.1449 0.1577 -- 100.0
RMS Deviations
Key Refinement Restraint Deviation
f_bond_d 0.005
f_dihedral_angle_d 15.317
f_plane_restr 0.004
f_angle_d 0.873
f_chiral_restr 0.034
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 17357
Nucleic Acid Atoms 0
Heterogen Atoms 240
Solvent Atoms 217

Software

Software
Software Name Purpose
PHENIX refinement version: 1.9_1692
XDS data reduction
XSCALE data scaling
PHENIX phasing