X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
Temperature 293.0
Details 100mM Bis-tris propane, pH 7.5 200 mM Na2SO4 20% PEG 3350

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 71.73 α = 90
b = 79.33 β = 90
c = 127.05 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS3 6M -- 2014-11-30
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ALBA BEAMLINE XALOC 0.97922 ALBA XALOC

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.95 49.08 100.0 0.2378 -- -- 6.7 -- 101579 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.952 2.022 99.0 1.5446 -- 1.0 5.6 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
SAD 1.952 49.08 -- 1.25 -- 101446 5082 99.74 -- 0.2012 0.1991 0.2421 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.9525 1.9747 -- 164 3167 0.3723 0.3936 -- 97.0
X Ray Diffraction 1.9747 1.9979 -- 155 3215 0.3358 0.3691 -- 100.0
X Ray Diffraction 1.9979 2.0223 -- 200 3157 0.3369 0.3799 -- 100.0
X Ray Diffraction 2.0223 2.0478 -- 134 3241 0.3149 0.3264 -- 100.0
X Ray Diffraction 2.0478 2.0748 -- 172 3208 0.2881 0.3161 -- 100.0
X Ray Diffraction 2.0748 2.1032 -- 217 3172 0.2672 0.2955 -- 100.0
X Ray Diffraction 2.1032 2.1333 -- 173 3165 0.2629 0.2599 -- 100.0
X Ray Diffraction 2.1333 2.1651 -- 184 3218 0.2517 0.3159 -- 100.0
X Ray Diffraction 2.1651 2.1989 -- 193 3211 0.2338 0.3018 -- 100.0
X Ray Diffraction 2.1989 2.235 -- 193 3191 0.2372 0.264 -- 100.0
X Ray Diffraction 2.235 2.2735 -- 179 3209 0.2209 0.2843 -- 100.0
X Ray Diffraction 2.2735 2.3149 -- 168 3224 0.2233 0.2977 -- 100.0
X Ray Diffraction 2.3149 2.3594 -- 189 3161 0.2304 0.2678 -- 100.0
X Ray Diffraction 2.3594 2.4076 -- 181 3235 0.2157 0.3339 -- 100.0
X Ray Diffraction 2.4076 2.4599 -- 164 3186 0.2152 0.2917 -- 100.0
X Ray Diffraction 2.4599 2.5171 -- 153 3230 0.2238 0.2776 -- 100.0
X Ray Diffraction 2.5171 2.5801 -- 149 3235 0.2298 0.2772 -- 100.0
X Ray Diffraction 2.5801 2.6498 -- 193 3227 0.2193 0.2721 -- 100.0
X Ray Diffraction 2.6498 2.7278 -- 143 3265 0.2288 0.317 -- 100.0
X Ray Diffraction 2.7278 2.8158 -- 149 3218 0.2282 0.2921 -- 100.0
X Ray Diffraction 2.8158 2.9165 -- 153 3224 0.2239 0.3135 -- 100.0
X Ray Diffraction 2.9165 3.0332 -- 167 3237 0.2173 0.2446 -- 100.0
X Ray Diffraction 3.0332 3.1712 -- 149 3242 0.2032 0.2126 -- 100.0
X Ray Diffraction 3.1712 3.3384 -- 152 3216 0.1851 0.2553 -- 100.0
X Ray Diffraction 3.3384 3.5475 -- 175 3209 0.1669 0.2195 -- 100.0
X Ray Diffraction 3.5475 3.8213 -- 177 3229 0.1537 0.18 -- 100.0
X Ray Diffraction 3.8213 4.2057 -- 162 3203 0.13 0.1294 -- 100.0
X Ray Diffraction 4.2057 4.8138 -- 163 3236 0.1179 0.1831 -- 100.0
X Ray Diffraction 4.8138 6.0632 -- 193 3190 0.1515 0.19 -- 100.0
X Ray Diffraction 6.0632 49.6011 -- 138 3243 0.195 0.1826 -- 100.0
RMS Deviations
Key Refinement Restraint Deviation
f_bond_d 0.004
f_dihedral_angle_d 10.29
f_plane_restr 0.004
f_chiral_restr 0.155
f_angle_d 1.302
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 4807
Nucleic Acid Atoms 0
Heterogen Atoms 274
Solvent Atoms 421

Software

Software
Software Name Purpose
PHENIX refinement version: (dev_2341: ???)
XDS data reduction
XSCALE data scaling
SHELXDE phasing