X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 5.5
Temperature 288.0
Details 13% PEG 8000,100mM MES, 1mM DTT, 10% DMSO

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 90.89 α = 90
b = 65.13 β = 96.13
c = 70.83 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS3 6M -- 2014-12-17
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON BESSY BEAMLINE 14.1 0.918409 BESSY 14.1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.37 45.59 97.5 -- 0.061 -- 2.9 -- 84027 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.37 1.45 90.6 0.498 -- 2.11 2.9 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.37 43.62 -- 1.35 -- 84018 4202 97.53 -- 0.1358 0.1345 0.1619 random selection
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.37 1.3862 -- 80 1518 0.3144 0.3868 -- 56.0
X Ray Diffraction 1.3862 1.4025 -- 143 2714 0.2381 0.2735 -- 99.0
X Ray Diffraction 1.4025 1.4196 -- 143 2705 0.2089 0.2176 -- 99.0
X Ray Diffraction 1.4196 1.4376 -- 141 2680 0.2062 0.2226 -- 100.0
X Ray Diffraction 1.4376 1.4565 -- 141 2695 0.2012 0.2231 -- 100.0
X Ray Diffraction 1.4565 1.4764 -- 145 2737 0.1959 0.233 -- 100.0
X Ray Diffraction 1.4764 1.4975 -- 140 2676 0.1809 0.2304 -- 99.0
X Ray Diffraction 1.4975 1.5199 -- 142 2694 0.1714 0.2096 -- 99.0
X Ray Diffraction 1.5199 1.5436 -- 144 2736 0.1516 0.1977 -- 99.0
X Ray Diffraction 1.5436 1.5689 -- 141 2666 0.1399 0.1839 -- 99.0
X Ray Diffraction 1.5689 1.596 -- 143 2732 0.1243 0.1452 -- 100.0
X Ray Diffraction 1.596 1.625 -- 142 2693 0.1199 0.1769 -- 100.0
X Ray Diffraction 1.625 1.6563 -- 142 2704 0.1137 0.1602 -- 100.0
X Ray Diffraction 1.6563 1.6901 -- 144 2738 0.1186 0.1523 -- 100.0
X Ray Diffraction 1.6901 1.7268 -- 143 2705 0.1186 0.1658 -- 100.0
X Ray Diffraction 1.7268 1.767 -- 142 2696 0.1204 0.166 -- 100.0
X Ray Diffraction 1.767 1.8112 -- 143 2719 0.1219 0.176 -- 99.0
X Ray Diffraction 1.8112 1.8602 -- 142 2698 0.118 0.1415 -- 99.0
X Ray Diffraction 1.8602 1.9149 -- 142 2701 0.1157 0.1584 -- 99.0
X Ray Diffraction 1.9149 1.9767 -- 141 2685 0.1161 0.1546 -- 99.0
X Ray Diffraction 1.9767 2.0474 -- 142 2689 0.1183 0.172 -- 99.0
X Ray Diffraction 2.0474 2.1293 -- 142 2693 0.1181 0.1453 -- 99.0
X Ray Diffraction 2.1293 2.2262 -- 143 2726 0.1212 0.1684 -- 99.0
X Ray Diffraction 2.2262 2.3436 -- 142 2700 0.1277 0.1607 -- 99.0
X Ray Diffraction 2.3436 2.4904 -- 141 2666 0.1275 0.1583 -- 98.0
X Ray Diffraction 2.4904 2.6827 -- 142 2700 0.1337 0.1587 -- 98.0
X Ray Diffraction 2.6827 2.9526 -- 139 2639 0.1355 0.1401 -- 96.0
X Ray Diffraction 2.9526 3.3797 -- 141 2685 0.135 0.153 -- 98.0
X Ray Diffraction 3.3797 4.2575 -- 142 2696 0.1227 0.1426 -- 97.0
X Ray Diffraction 4.2575 43.62 -- 144 2730 0.1492 0.1459 -- 97.0
RMS Deviations
Key Refinement Restraint Deviation
f_dihedral_angle_d 21.851
f_angle_d 0.807
f_chiral_restr 0.073
f_bond_d 0.005
f_plane_restr 0.005
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 2846
Nucleic Acid Atoms 0
Heterogen Atoms 44
Solvent Atoms 364

Software

Software
Software Name Purpose
PHENIX refinement version: (1.10.1-2155_1492)
XDS data reduction
XDS data scaling
PHASER phasing
Coot model building