X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
Temperature 277.0
Details 20% PEG 3350, 0.2 M sodium formate

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 94.73 α = 90
b = 94.73 β = 90
c = 52.73 γ = 120
Symmetry
Space Group P 62

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS 6M-F -- 2015-12-14
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ESRF BEAMLINE ID30B 0.9762 ESRF ID30B

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.66 44.36 100.0 0.05 -- -- 19.7 -- 32033 -- -- 32.98
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.66 1.69 100.0 1.469 -- -- 18.7 1598

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
SAD 1.66 44.357 -- 1.34 -- 32010 1564 99.99 -- 0.1686 0.1677 0.1862 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.6602 1.7137 -- 142 2737 0.245 0.2376 0.0 100.0
X Ray Diffraction 1.7137 1.775 -- 170 2745 0.2235 0.2277 0.0 100.0
X Ray Diffraction 1.775 1.8461 -- 106 2764 0.2047 0.2101 0.0 100.0
X Ray Diffraction 1.8461 1.9301 -- 130 2779 0.1878 0.2237 0.0 100.0
X Ray Diffraction 1.9301 2.0318 -- 156 2739 0.1827 0.1906 0.0 100.0
X Ray Diffraction 2.0318 2.1591 -- 138 2760 0.1806 0.1895 0.0 100.0
X Ray Diffraction 2.1591 2.3258 -- 156 2741 0.1696 0.1852 0.0 100.0
X Ray Diffraction 2.3258 2.5599 -- 141 2772 0.1694 0.1828 0.0 100.0
X Ray Diffraction 2.5599 2.9302 -- 168 2757 0.1718 0.2011 0.0 100.0
X Ray Diffraction 2.9302 3.6915 -- 100 2813 0.1721 0.1867 0.0 100.0
X Ray Diffraction 3.6915 44.3727 -- 157 2839 0.151 0.1727 0.0 100.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 63.6431
RMS Deviations
Key Refinement Restraint Deviation
f_bond_d 0.017
f_dihedral_angle_d 13.923
f_plane_restr 0.01
f_angle_d 1.352
f_chiral_restr 0.079
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 1806
Nucleic Acid Atoms 0
Heterogen Atoms 0
Solvent Atoms 131

Software

Software
Software Name Purpose
PHENIX refinement version: dev_2608
Aimless data scaling version: 0.5.17
PDB_EXTRACT data extraction version: 3.20
XDS data reduction
SHELXDE phasing