X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
Temperature 293.0
Details PEG 4000, Glycerol, Magnesium chloride, Calcium chloride

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 104.36 α = 90
b = 157.25 β = 90
c = 179.63 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315r -- 2015-01-10
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SSRF BEAMLINE BL17U 0.9795 SSRF BL17U

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.3 50 99.9 -- -- -- 7.4 -- 131984 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
-- -- -- -- -- -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.3 47.636 -- 1.34 -- 131273 6500 99.81 -- 0.1822 0.1813 0.1999 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.3 2.3261 -- 203 4122 0.273 0.2996 -- 99.0
X Ray Diffraction 2.3261 2.3535 -- 207 4106 0.2634 0.2896 -- 100.0
X Ray Diffraction 2.3535 2.3822 -- 223 4117 0.2536 0.2856 -- 99.0
X Ray Diffraction 2.3822 2.4124 -- 221 4092 0.2465 0.2982 -- 100.0
X Ray Diffraction 2.4124 2.4441 -- 227 4110 0.2419 0.2681 -- 99.0
X Ray Diffraction 2.4441 2.4776 -- 176 4155 0.2275 0.2677 -- 100.0
X Ray Diffraction 2.4776 2.513 -- 210 4103 0.2353 0.2707 -- 100.0
X Ray Diffraction 2.513 2.5505 -- 230 4127 0.2354 0.2607 -- 100.0
X Ray Diffraction 2.5505 2.5903 -- 213 4103 0.2271 0.2993 -- 100.0
X Ray Diffraction 2.5903 2.6328 -- 219 4118 0.228 0.2308 -- 100.0
X Ray Diffraction 2.6328 2.6782 -- 218 4127 0.2127 0.2537 -- 100.0
X Ray Diffraction 2.6782 2.7269 -- 205 4142 0.214 0.2563 -- 100.0
X Ray Diffraction 2.7269 2.7793 -- 217 4127 0.2043 0.246 -- 100.0
X Ray Diffraction 2.7793 2.8361 -- 216 4143 0.2061 0.2299 -- 100.0
X Ray Diffraction 2.8361 2.8977 -- 234 4154 0.1988 0.2252 -- 100.0
X Ray Diffraction 2.8977 2.9651 -- 219 4123 0.202 0.2266 -- 100.0
X Ray Diffraction 2.9651 3.0392 -- 210 4141 0.1989 0.2211 -- 100.0
X Ray Diffraction 3.0392 3.1214 -- 207 4131 0.1943 0.2165 -- 100.0
X Ray Diffraction 3.1214 3.2132 -- 219 4176 0.1931 0.2037 -- 100.0
X Ray Diffraction 3.2132 3.3169 -- 211 4160 0.1825 0.1971 -- 100.0
X Ray Diffraction 3.3169 3.4354 -- 248 4138 0.1781 0.2045 -- 100.0
X Ray Diffraction 3.4354 3.573 -- 230 4165 0.1668 0.1899 -- 100.0
X Ray Diffraction 3.573 3.7355 -- 222 4181 0.1625 0.1997 -- 100.0
X Ray Diffraction 3.7355 3.9324 -- 208 4179 0.153 0.1669 -- 100.0
X Ray Diffraction 3.9324 4.1786 -- 224 4185 0.1458 0.1647 -- 100.0
X Ray Diffraction 4.1786 4.501 -- 226 4181 0.1359 0.1401 -- 100.0
X Ray Diffraction 4.501 4.9535 -- 212 4218 0.1311 0.1414 -- 100.0
X Ray Diffraction 4.9535 5.6693 -- 232 4223 0.1607 0.1595 -- 100.0
X Ray Diffraction 5.6693 7.1389 -- 196 4310 0.1811 0.2036 -- 100.0
X Ray Diffraction 7.1389 47.6466 -- 217 4416 0.1733 0.1648 -- 99.0
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.005
f_chiral_restr 0.063
f_dihedral_angle_d 21.456
f_angle_d 1.035
f_bond_d 0.008
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 17043
Nucleic Acid Atoms 0
Heterogen Atoms 309
Solvent Atoms 557

Software

Software
Software Name Purpose
PHENIX refinement version: (1.10.1_2155)
HKL-2000 data collection
HKL-2000 data scaling
PHASER phasing