X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
Temperature 277.15
Details 0.2 M sodium fluoride 0.1 M Bis Tris propane pH 8.5 20 % w/v PEG 3350

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 129.79 α = 90
b = 65.19 β = 130.11
c = 88.01 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS 6M -- 2015-09-18
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SLS BEAMLINE X10SA 1.0 SLS X10SA

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.9 43.96 96.3 0.103 -- -- 3.17 -- 42717 -- -- 32.69
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.9 2.01 -- -- -- 1.07 2.59 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.9 43.96 -- 0.0 -- 42716 2136 96.1 -- 0.189 0.188 0.213 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.9 -- -- 114 2164 0.279 0.302 0.0 69.16
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 34.89
Anisotropic B[1][1] -0.4681
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 1.4851
Anisotropic B[2][2] 3.8541
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -3.386
RMS Deviations
Key Refinement Restraint Deviation
t_bond_d 0.01
t_omega_torsion 3.33
t_other_torsion 15.62
t_angle_deg 1.06
Coordinate Error
Parameter Value
Luzzati ESD (Observed) 0.25
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 3283
Nucleic Acid Atoms 0
Heterogen Atoms 44
Solvent Atoms 366

Software

Software
Software Name Purpose
BUSTER refinement version: 2.11.6
XDS data reduction
XDS data scaling
PHASER phasing