X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
Temperature 298.0
Details 30 & PEG-400 0.1 M Natrium Acetate, pH 4.5 0.2 M Calcium acetate

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 83.28 α = 90
b = 122.04 β = 90
c = 139.15 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS 2M-F -- 2013-10-22
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SLS BEAMLINE X06SA 1.00004 SLS X06SA

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.9 49.22 100.0 0.06825 -- -- 13.3 -- 112104 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.9 1.968 100.0 1.523 -- 1.59 12.3 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.9 49.222 -- 1.36 -- 112064 5592 99.96 -- 0.1779 0.1767 0.2015 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.9 1.9216 -- 166 3477 0.2847 0.2833 -- 100.0
X Ray Diffraction 1.9216 1.9442 -- 180 3569 0.2678 0.306 -- 100.0
X Ray Diffraction 1.9442 1.9679 -- 185 3513 0.2486 0.2821 -- 100.0
X Ray Diffraction 1.9679 1.9928 -- 182 3503 0.2342 0.3029 -- 100.0
X Ray Diffraction 1.9928 2.019 -- 181 3497 0.225 0.2564 -- 100.0
X Ray Diffraction 2.019 2.0467 -- 195 3507 0.2166 0.2409 -- 100.0
X Ray Diffraction 2.0467 2.0759 -- 184 3527 0.2139 0.2536 -- 100.0
X Ray Diffraction 2.0759 2.1069 -- 189 3523 0.2053 0.2558 -- 100.0
X Ray Diffraction 2.1069 2.1399 -- 163 3539 0.1988 0.1975 -- 100.0
X Ray Diffraction 2.1399 2.1749 -- 191 3496 0.1942 0.2334 -- 100.0
X Ray Diffraction 2.1749 2.2124 -- 181 3506 0.1881 0.2048 -- 100.0
X Ray Diffraction 2.2124 2.2527 -- 184 3558 0.1832 0.2259 -- 100.0
X Ray Diffraction 2.2527 2.296 -- 186 3469 0.1799 0.236 -- 100.0
X Ray Diffraction 2.296 2.3429 -- 165 3574 0.1718 0.1912 -- 100.0
X Ray Diffraction 2.3429 2.3938 -- 190 3520 0.1661 0.2101 -- 100.0
X Ray Diffraction 2.3938 2.4495 -- 207 3519 0.1671 0.1888 -- 100.0
X Ray Diffraction 2.4495 2.5107 -- 188 3524 0.1695 0.2015 -- 100.0
X Ray Diffraction 2.5107 2.5786 -- 185 3543 0.1616 0.2059 -- 100.0
X Ray Diffraction 2.5786 2.6545 -- 212 3520 0.166 0.1918 -- 100.0
X Ray Diffraction 2.6545 2.7402 -- 176 3551 0.1697 0.1852 -- 100.0
X Ray Diffraction 2.7402 2.8381 -- 193 3560 0.1758 0.1969 -- 100.0
X Ray Diffraction 2.8381 2.9517 -- 186 3527 0.1856 0.2114 -- 100.0
X Ray Diffraction 2.9517 3.086 -- 207 3557 0.1802 0.2075 -- 100.0
X Ray Diffraction 3.086 3.2487 -- 196 3530 0.1906 0.2295 -- 100.0
X Ray Diffraction 3.2487 3.4522 -- 193 3586 0.1828 0.2361 -- 100.0
X Ray Diffraction 3.4522 3.7187 -- 176 3582 0.1683 0.1718 -- 100.0
X Ray Diffraction 3.7187 4.0927 -- 199 3606 0.1466 0.1668 -- 100.0
X Ray Diffraction 4.0927 4.6846 -- 193 3617 0.1326 0.1504 -- 100.0
X Ray Diffraction 4.6846 5.9005 -- 178 3662 0.1605 0.1694 -- 100.0
X Ray Diffraction 5.9005 49.2381 -- 181 3810 0.2069 0.2263 -- 99.0
RMS Deviations
Key Refinement Restraint Deviation
f_angle_d 0.982
f_bond_d 0.01
f_chiral_restr 0.059
f_plane_restr 0.006
f_dihedral_angle_d 12.714
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 8949
Nucleic Acid Atoms 0
Heterogen Atoms 240
Solvent Atoms 633

Software

Software
Software Name Purpose
PHENIX refinement version: (dev_2341: ???)
XDS data reduction
XSCALE data scaling
PHASER phasing