X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion
pH 7
Temperature 298.0
Details PEG 400, NaCl

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 104.74 α = 90
b = 175.42 β = 90
c = 73.15 γ = 90
Symmetry
Space Group P 21 21 2

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS3 6M -- 2014-03-28
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SLS BEAMLINE X06SA 1.0 SLS X06SA

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.21 49.51 99.4 0.071 -- -- 5.9 -- 68197 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.21 2.33 96.8 1.14 -- 1.5 5.5 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.207 49.505 -- 1.06 -- 68197 6480 99.02 -- 0.1978 0.1972 0.2101 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.2069 2.232 -- 176 3439 0.3959 0.4029 -- 82.0
X Ray Diffraction 2.232 2.2582 -- 212 4082 0.332 0.3393 -- 99.0
X Ray Diffraction 2.2582 2.2858 -- 222 4166 0.3185 0.31 -- 99.0
X Ray Diffraction 2.2858 2.3147 -- 214 4037 0.312 0.3326 -- 99.0
X Ray Diffraction 2.3147 2.3451 -- 214 4132 0.2728 0.3044 -- 100.0
X Ray Diffraction 2.3451 2.3773 -- 219 4180 0.2641 0.291 -- 100.0
X Ray Diffraction 2.3773 2.4112 -- 215 4117 0.2624 0.289 -- 100.0
X Ray Diffraction 2.4112 2.4472 -- 218 4101 0.2623 0.2801 -- 100.0
X Ray Diffraction 2.4472 2.4855 -- 216 4170 0.241 0.2683 -- 100.0
X Ray Diffraction 2.4855 2.5262 -- 215 4143 0.2389 0.2428 -- 100.0
X Ray Diffraction 2.5262 2.5698 -- 216 4131 0.2261 0.2227 -- 100.0
X Ray Diffraction 2.5698 2.6165 -- 222 4191 0.211 0.2111 -- 100.0
X Ray Diffraction 2.6165 2.6668 -- 212 4102 0.2091 0.2382 -- 100.0
X Ray Diffraction 2.6668 2.7212 -- 211 4164 0.2019 0.2464 -- 100.0
X Ray Diffraction 2.7212 2.7804 -- 218 4122 0.1919 0.2268 -- 100.0
X Ray Diffraction 2.7804 2.8451 -- 220 4119 0.1907 0.1944 -- 99.0
X Ray Diffraction 2.8451 2.9162 -- 214 4162 0.1852 0.2208 -- 100.0
X Ray Diffraction 2.9162 2.9951 -- 216 4103 0.184 0.2319 -- 100.0
X Ray Diffraction 2.9951 3.0832 -- 219 4135 0.1834 0.2208 -- 100.0
X Ray Diffraction 3.0832 3.1827 -- 222 4191 0.1914 0.1862 -- 100.0
X Ray Diffraction 3.1827 3.2964 -- 217 4121 0.1925 0.2259 -- 100.0
X Ray Diffraction 3.2964 3.4284 -- 215 4110 0.1836 0.1883 -- 100.0
X Ray Diffraction 3.4284 3.5844 -- 218 4152 0.1765 0.1737 -- 100.0
X Ray Diffraction 3.5844 3.7733 -- 217 4131 0.1793 0.2099 -- 100.0
X Ray Diffraction 3.7733 4.0096 -- 215 4149 0.1927 0.2091 -- 100.0
X Ray Diffraction 4.0096 4.319 -- 225 4122 0.1801 0.1826 -- 99.0
X Ray Diffraction 4.319 4.7533 -- 218 4127 0.1664 0.1757 -- 100.0
X Ray Diffraction 4.7533 5.4404 -- 220 4106 0.1763 0.1921 -- 100.0
X Ray Diffraction 5.4404 6.8514 -- 222 4106 0.2017 0.2119 -- 99.0
X Ray Diffraction 6.8514 49.5179 -- 222 4093 0.1908 0.1895 -- 98.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 60.1
RMS Deviations
Key Refinement Restraint Deviation
f_bond_d 0.007
f_angle_d 0.996
f_plane_restr 0.005
f_chiral_restr 0.044
f_dihedral_angle_d 10.791
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 6480
Nucleic Acid Atoms 0
Heterogen Atoms 0
Solvent Atoms 159

Software

Software
Software Name Purpose
PHENIX refinement version: 1.9_1692
XDS data reduction version: VERSION November 11, 2013
XSCALE data scaling version: VERSION November 11, 2013
MOLREP phasing version: Phaser