X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
Temperature 277.0
Details 30% PEG 400, 200 mM CaAc, 0.1M NaAc pH 4.5-4.8

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 35.51 α = 90
b = 59.24 β = 100.17
c = 67.32 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315r -- 2015-04-15
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ALS BEAMLINE 5.0.1 0.97741 ALS 5.0.1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.49 59.24 99.1 0.047 -- -- 4.2 -- 44551 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
-- -- -- -- -- -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.49 34.952 -- 1.35 -- 44528 1998 99.0 -- 0.1646 0.1634 0.1891 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.49 1.5273 -- 139 2974 0.2566 0.2957 -- 97.0
X Ray Diffraction 1.5273 1.5686 -- 141 3017 0.2258 0.245 -- 99.0
X Ray Diffraction 1.5686 1.6147 -- 143 3033 0.2018 0.2245 -- 99.0
X Ray Diffraction 1.6147 1.6669 -- 143 3021 0.1893 0.2216 -- 99.0
X Ray Diffraction 1.6669 1.7264 -- 142 3037 0.1863 0.2127 -- 99.0
X Ray Diffraction 1.7264 1.7956 -- 143 3045 0.1784 0.1913 -- 99.0
X Ray Diffraction 1.7956 1.8773 -- 143 3040 0.1659 0.1782 -- 99.0
X Ray Diffraction 1.8773 1.9762 -- 142 3041 0.1626 0.1888 -- 99.0
X Ray Diffraction 1.9762 2.1 -- 143 3037 0.149 0.1798 -- 99.0
X Ray Diffraction 2.1 2.2622 -- 142 3019 0.1415 0.1666 -- 99.0
X Ray Diffraction 2.2622 2.4898 -- 143 3043 0.1461 0.1628 -- 99.0
X Ray Diffraction 2.4898 2.8499 -- 144 3056 0.1484 0.1729 -- 100.0
X Ray Diffraction 2.8499 3.59 -- 144 3074 0.1506 0.1845 -- 99.0
X Ray Diffraction 3.59 34.9617 -- 146 3093 0.168 0.1957 -- 98.0
RMS Deviations
Key Refinement Restraint Deviation
f_bond_d 0.012
f_chiral_restr 0.084
f_dihedral_angle_d 15.284
f_angle_d 1.253
f_plane_restr 0.006
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 1967
Nucleic Acid Atoms 0
Heterogen Atoms 97
Solvent Atoms 280

Software

Software
Software Name Purpose
PHENIX refinement version: (1.10_2155: ???)
iMOSFLM data reduction
Aimless data scaling
PHENIX phasing