X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
pH 7
Temperature 293.0
Details 32% PEG 400, 100mM HEPES, 300mM Ammonium phosphate

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 126.92 α = 90
b = 149.33 β = 90
c = 184.77 γ = 90
Symmetry
Space Group I 2 2 2

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS3 6M -- 2015-08-02
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 17-ID 1.00 APS 17-ID

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.5 30 100.0 -- -- -- 6.2 -- 60238 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
-- -- -- -- -- -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.508 30.009 -- 1.34 -- 58538 2952 97.12 -- 0.1874 0.1854 0.2238 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.5082 2.5494 -- 102 1952 0.2469 0.2888 -- 72.0
X Ray Diffraction 2.5494 2.5933 -- 110 2196 0.243 0.2749 -- 81.0
X Ray Diffraction 2.5933 2.6404 -- 124 2493 0.2421 0.2759 -- 92.0
X Ray Diffraction 2.6404 2.6912 -- 134 2589 0.2348 0.2744 -- 97.0
X Ray Diffraction 2.6912 2.7461 -- 164 2653 0.2322 0.2746 -- 99.0
X Ray Diffraction 2.7461 2.8057 -- 155 2708 0.2244 0.2586 -- 100.0
X Ray Diffraction 2.8057 2.871 -- 150 2673 0.222 0.252 -- 100.0
X Ray Diffraction 2.871 2.9427 -- 140 2689 0.218 0.2332 -- 100.0
X Ray Diffraction 2.9427 3.0222 -- 131 2710 0.2078 0.2364 -- 100.0
X Ray Diffraction 3.0222 3.111 -- 147 2699 0.2243 0.2579 -- 100.0
X Ray Diffraction 3.111 3.2113 -- 159 2706 0.213 0.2757 -- 100.0
X Ray Diffraction 3.2113 3.326 -- 138 2697 0.2091 0.2896 -- 100.0
X Ray Diffraction 3.326 3.4589 -- 162 2710 0.1928 0.2577 -- 100.0
X Ray Diffraction 3.4589 3.6161 -- 143 2720 0.1761 0.2207 -- 100.0
X Ray Diffraction 3.6161 3.8064 -- 137 2721 0.1617 0.1906 -- 100.0
X Ray Diffraction 3.8064 4.0444 -- 129 2742 0.155 0.1832 -- 100.0
X Ray Diffraction 4.0444 4.3558 -- 135 2752 0.1535 0.2012 -- 100.0
X Ray Diffraction 4.3558 4.7925 -- 147 2741 0.1417 0.1727 -- 100.0
X Ray Diffraction 4.7925 5.4823 -- 139 2772 0.1466 0.1612 -- 100.0
X Ray Diffraction 5.4823 6.8933 -- 134 2786 0.1931 0.2367 -- 100.0
X Ray Diffraction 6.8933 30.011 -- 172 2877 0.1841 0.2126 -- 100.0
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.005
f_chiral_restr 0.036
f_bond_d 0.011
f_angle_d 0.898
f_dihedral_angle_d 15.239
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 8940
Nucleic Acid Atoms 0
Heterogen Atoms 261
Solvent Atoms 419

Software

Software
Software Name Purpose
PHENIX refinement version: 1.9_1692
HKL-2000 data reduction
HKL-2000 data scaling
PHASER phasing