X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
pH 6.9
Temperature 295.0
Details 1.8 M sodium phosphate monobasic monohydrate, potassium phosphate dibasic pH 6.9

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 100.03 α = 90
b = 100.03 β = 90
c = 123.79 γ = 90
Symmetry
Space Group P 43

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315r M1: parabola M2: torroid 2014-02-12
Diffraction Radiation
Monochromator Protocol
Si (111) SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ALS BEAMLINE 8.2.1 1.0 ALS 8.2.1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.9 46.58 100.0 0.103 0.103 -- 3.8 -- 27096 -- -- 51.72
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.9 3.08 100.0 0.7 -- 2.1 3.8 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.9 46.58 -- 0.01 -- 25737 1319 99.94 -- 0.1847 0.1826 0.2243 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.9001 2.9559 -- 120 2871 0.3121 0.3019 -- 100.0
X Ray Diffraction 2.9559 3.0162 -- 122 2832 0.2909 0.3733 -- 100.0
X Ray Diffraction 3.0162 3.0817 -- 150 2782 0.2822 0.3631 -- 100.0
X Ray Diffraction 3.0817 3.1534 -- 128 2818 0.2615 0.3099 -- 100.0
X Ray Diffraction 3.1534 3.2323 -- 160 2811 0.2425 0.3317 -- 100.0
X Ray Diffraction 3.2323 3.3196 -- 134 2826 0.219 0.2914 -- 100.0
X Ray Diffraction 3.3196 3.4173 -- 150 2772 0.2198 0.2536 -- 100.0
X Ray Diffraction 3.4173 3.5275 -- 146 2805 0.2023 0.2705 -- 100.0
X Ray Diffraction 3.5275 3.6536 -- 130 2823 0.1959 0.2293 -- 100.0
X Ray Diffraction 3.6536 3.7998 -- 152 2801 0.1861 0.2364 -- 100.0
X Ray Diffraction 3.7998 3.9726 -- 122 2846 0.1634 0.1813 -- 100.0
X Ray Diffraction 3.9726 4.182 -- 147 2815 0.1481 0.1923 -- 100.0
X Ray Diffraction 4.182 4.4438 -- 125 2799 0.1364 0.1811 -- 100.0
X Ray Diffraction 4.4438 4.7866 -- 180 2779 0.1332 0.1591 -- 100.0
X Ray Diffraction 4.7866 5.2677 -- 160 2805 0.1466 0.1657 -- 100.0
X Ray Diffraction 5.2677 6.0285 -- 134 2805 0.1839 0.2385 -- 100.0
X Ray Diffraction 6.0285 7.59 -- 156 2809 0.1817 0.2121 -- 100.0
X Ray Diffraction 7.59 46.5858 -- 166 2785 0.1708 0.2341 -- 100.0
RMS Deviations
Key Refinement Restraint Deviation
f_chiral_restr 0.044
f_angle_d 0.599
f_plane_restr 0.004
f_dihedral_angle_d 12.88
f_bond_d 0.004
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 4870
Nucleic Acid Atoms 0
Heterogen Atoms 15
Solvent Atoms 35

Software

Software
Software Name Purpose
PHENIX refinement version: (1.10_2155: ???)
XDS data reduction
Aimless data scaling
PHASER phasing