X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
Temperature 294.0
Details 150 mM Tris 8.0, 20% PEG5K, 8% ethylene glycol

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 51.04 α = 90
b = 82.25 β = 90
c = 110.08 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS3 6M -- 2015-09-24
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ALBA BEAMLINE XALOC 1.00556 ALBA XALOC

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
-- -- 99.9 -- -- -- 6.5 -- 128337 -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.5 24.863 -- 1.35 -- 74896 3697 99.98 -- 0.1619 0.1608 0.1833 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.5 1.5197 -- 136 2668 0.1873 0.221 -- 100.0
X Ray Diffraction 1.5197 1.5406 -- 145 2705 0.1755 0.2009 -- 100.0
X Ray Diffraction 1.5406 1.5626 -- 139 2711 0.1759 0.202 -- 100.0
X Ray Diffraction 1.5626 1.5859 -- 132 2721 0.1708 0.1976 -- 100.0
X Ray Diffraction 1.5859 1.6107 -- 139 2703 0.1686 0.1993 -- 100.0
X Ray Diffraction 1.6107 1.6371 -- 130 2728 0.1693 0.1907 -- 100.0
X Ray Diffraction 1.6371 1.6653 -- 147 2692 0.171 0.2146 -- 100.0
X Ray Diffraction 1.6653 1.6956 -- 147 2697 0.1707 0.212 -- 100.0
X Ray Diffraction 1.6956 1.7282 -- 130 2726 0.1682 0.1949 -- 100.0
X Ray Diffraction 1.7282 1.7634 -- 143 2727 0.1659 0.1927 -- 100.0
X Ray Diffraction 1.7634 1.8018 -- 144 2670 0.1685 0.1872 -- 100.0
X Ray Diffraction 1.8018 1.8437 -- 159 2696 0.1616 0.1906 -- 100.0
X Ray Diffraction 1.8437 1.8897 -- 133 2757 0.1643 0.1901 -- 100.0
X Ray Diffraction 1.8897 1.9408 -- 143 2707 0.1569 0.1906 -- 100.0
X Ray Diffraction 1.9408 1.9979 -- 136 2733 0.1589 0.1685 -- 100.0
X Ray Diffraction 1.9979 2.0624 -- 139 2750 0.1555 0.1855 -- 100.0
X Ray Diffraction 2.0624 2.136 -- 147 2709 0.1531 0.2008 -- 100.0
X Ray Diffraction 2.136 2.2215 -- 161 2747 0.1587 0.1741 -- 100.0
X Ray Diffraction 2.2215 2.3225 -- 141 2734 0.1558 0.1673 -- 100.0
X Ray Diffraction 2.3225 2.4449 -- 117 2766 0.1564 0.1576 -- 100.0
X Ray Diffraction 2.4449 2.5979 -- 156 2728 0.1595 0.1901 -- 100.0
X Ray Diffraction 2.5979 2.7983 -- 139 2772 0.1644 0.1923 -- 100.0
X Ray Diffraction 2.7983 3.0794 -- 132 2779 0.1632 0.1845 -- 100.0
X Ray Diffraction 3.0794 3.5239 -- 150 2789 0.1597 0.1903 -- 100.0
X Ray Diffraction 3.5239 4.4357 -- 155 2830 0.1458 0.1618 -- 100.0
X Ray Diffraction 4.4357 24.866 -- 157 2954 0.1677 0.1767 -- 100.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 18.2082
RMS Deviations
Key Refinement Restraint Deviation
f_chiral_restr 0.057
f_plane_restr 0.007
f_dihedral_angle_d 16.671
f_bond_d 0.008
f_angle_d 1.012
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 3158
Nucleic Acid Atoms 0
Heterogen Atoms 10
Solvent Atoms 631

Software

Software
Software Name Purpose
PHENIX refinement version: 1.10
PDB_EXTRACT data extraction version: 3.20
XDS data reduction
Aimless data scaling
PHASER phasing