X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
Temperature 293.0
Details 0.1M imidazole pH 6.5, 1.0M sodium acetate trihydrate, 10%(v/v) 1,2-Butanediol

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 142.84 α = 90
b = 127.77 β = 90.38
c = 90.78 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD RIGAKU SATURN 944+ -- 2015-06-13
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
ROTATING ANODE RIGAKU MICROMAX-007 HF 1.54 -- --

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.6 42.24 99.17 0.138 -- -- 3.8 -- 188352 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.598 2.691 -- -- -- -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.598 42.24 -- 1.34 -- 49742 2006 99.13 -- 0.1969 0.1951 0.2376 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.5984 2.6634 -- 137 3309 0.2554 0.272 -- 97.0
X Ray Diffraction 2.6634 2.7354 -- 137 3395 0.2506 0.3014 -- 99.0
X Ray Diffraction 2.7354 2.8159 -- 144 3371 0.2481 0.3268 -- 99.0
X Ray Diffraction 2.8159 2.9067 -- 141 3377 0.2497 0.2704 -- 99.0
X Ray Diffraction 2.9067 3.0106 -- 145 3393 0.2322 0.3197 -- 99.0
X Ray Diffraction 3.0106 3.1311 -- 139 3397 0.2293 0.3144 -- 99.0
X Ray Diffraction 3.1311 3.2735 -- 146 3393 0.2207 0.2594 -- 99.0
X Ray Diffraction 3.2735 3.446 -- 141 3404 0.2069 0.259 -- 99.0
X Ray Diffraction 3.446 3.6618 -- 148 3460 0.1919 0.2736 -- 100.0
X Ray Diffraction 3.6618 3.9444 -- 144 3395 0.1718 0.208 -- 100.0
X Ray Diffraction 3.9444 4.341 -- 145 3440 0.1626 0.2099 -- 100.0
X Ray Diffraction 4.341 4.9683 -- 141 3439 0.1445 0.162 -- 100.0
X Ray Diffraction 4.9683 6.2562 -- 147 3482 0.188 0.2155 -- 100.0
X Ray Diffraction 6.2562 42.2488 -- 151 3481 0.1715 0.182 -- 99.0
RMS Deviations
Key Refinement Restraint Deviation
f_bond_d 0.005
f_angle_d 0.86
f_dihedral_angle_d 10.451
f_chiral_restr 0.033
f_plane_restr 0.004
Coordinate Error
Parameter Value
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 7773
Nucleic Acid Atoms 0
Heterogen Atoms 27
Solvent Atoms 341

Software

Software
Software Name Purpose
PHENIX refinement version: 1.9_1692
HKL-2000 data reduction
HKL-2000 data scaling
PHENIX phasing