X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 8
Temperature 290.0
Details 20% (w/v) PEG 3000 100 mM Imidazole/ Hydrochloric acid pH 8.0 200 mM Zinc acetate

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 72.48 α = 90
b = 68.04 β = 101.85
c = 97.69 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 270 -- 2014-09-30
Diffraction Radiation
Monochromator Protocol
DCM Si (111) Crystal SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON PAL/PLS BEAMLINE 7A (6B, 6C1) 1.0000 PAL/PLS 7A (6B, 6C1)

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.92 27.72 98.4 -- 0.076 -- 7.5 -- 69631 -- -- 21.03
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.93 1.96 97.4 -- -- 11.26 7.6 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.922 27.717 -- 1.34 -- 69631 3514 98.08 -- 0.1677 0.1659 0.201 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.9219 1.9483 -- 125 2394 0.183 0.2331 -- 88.0
X Ray Diffraction 1.9483 1.9761 -- 149 2548 0.1793 0.2295 -- 97.0
X Ray Diffraction 1.9761 2.0056 -- 144 2640 0.1693 0.224 -- 98.0
X Ray Diffraction 2.0056 2.0369 -- 114 2624 0.1729 0.2419 -- 98.0
X Ray Diffraction 2.0369 2.0703 -- 137 2685 0.1659 0.2458 -- 98.0
X Ray Diffraction 2.0703 2.106 -- 160 2551 0.1714 0.2046 -- 98.0
X Ray Diffraction 2.106 2.1442 -- 124 2640 0.169 0.2305 -- 98.0
X Ray Diffraction 2.1442 2.1855 -- 136 2629 0.1661 0.2288 -- 98.0
X Ray Diffraction 2.1855 2.2301 -- 155 2631 0.1756 0.2184 -- 98.0
X Ray Diffraction 2.2301 2.2785 -- 150 2632 0.1688 0.2396 -- 98.0
X Ray Diffraction 2.2785 2.3315 -- 134 2664 0.1643 0.2147 -- 98.0
X Ray Diffraction 2.3315 2.3898 -- 138 2626 0.1696 0.222 -- 98.0
X Ray Diffraction 2.3898 2.4544 -- 133 2642 0.1723 0.2204 -- 99.0
X Ray Diffraction 2.4544 2.5265 -- 127 2687 0.1738 0.2049 -- 99.0
X Ray Diffraction 2.5265 2.608 -- 139 2663 0.1742 0.2088 -- 99.0
X Ray Diffraction 2.608 2.7012 -- 122 2665 0.1768 0.24 -- 99.0
X Ray Diffraction 2.7012 2.8092 -- 131 2678 0.1674 0.1893 -- 99.0
X Ray Diffraction 2.8092 2.9369 -- 130 2672 0.1731 0.2199 -- 99.0
X Ray Diffraction 2.9369 3.0916 -- 157 2653 0.1696 0.1927 -- 99.0
X Ray Diffraction 3.0916 3.285 -- 156 2675 0.1621 0.2104 -- 99.0
X Ray Diffraction 3.285 3.5382 -- 147 2661 0.161 0.1853 -- 99.0
X Ray Diffraction 3.5382 3.8934 -- 149 2706 0.1507 0.1643 -- 99.0
X Ray Diffraction 3.8934 4.4547 -- 158 2690 0.142 0.1844 -- 100.0
X Ray Diffraction 4.4547 5.6049 -- 146 2726 0.1426 0.1508 -- 99.0
X Ray Diffraction 5.6049 27.7195 -- 153 2735 0.2105 0.2222 -- 98.0
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.007
f_chiral_restr 0.064
f_dihedral_angle_d 10.659
f_bond_d 0.012
f_angle_d 1.135
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 6587
Nucleic Acid Atoms 0
Heterogen Atoms 0
Solvent Atoms 959

Software

Software
Software Name Purpose
HKL-2000 data processing
PHENIX refinement version: (1.10.1_2155)