X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
Temperature 293.0
Details 0.1M MES, 0.1M NaCl, PEG400

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 101.55 α = 90
b = 185.51 β = 90
c = 98.88 γ = 90
Symmetry
Space Group C 2 2 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS3 6M -- 2015-11-23
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SPRING-8 BEAMLINE BL41XU 0.7 SPring-8 BL41XU

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.06 30 99.7 0.077 -- 25.225 10.6 -- 418461 -- -- 16.66
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.06 1.1 99.9 0.42 -- -- 8.3 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.06 29.691 -- 1.33 -- 410323 20694 97.32 -- 0.1257 0.1253 0.1327 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.0566 1.0686 -- 424 9095 0.1536 0.1654 -- 68.0
X Ray Diffraction 1.0686 1.0812 -- 548 11597 0.144 0.1624 -- 87.0
X Ray Diffraction 1.0812 1.0944 -- 587 12150 0.151 0.1745 -- 91.0
X Ray Diffraction 1.0944 1.1082 -- 666 12436 0.1487 0.1557 -- 94.0
X Ray Diffraction 1.1082 1.1228 -- 643 12620 0.1427 0.1542 -- 95.0
X Ray Diffraction 1.1228 1.1382 -- 755 12968 0.1401 0.1508 -- 98.0
X Ray Diffraction 1.1382 1.1545 -- 719 13133 0.1361 0.1471 -- 100.0
X Ray Diffraction 1.1545 1.1717 -- 730 13207 0.1392 0.1419 -- 100.0
X Ray Diffraction 1.1717 1.19 -- 727 13228 0.1349 0.1581 -- 100.0
X Ray Diffraction 1.19 1.2095 -- 735 13211 0.1356 0.1547 -- 100.0
X Ray Diffraction 1.2095 1.2304 -- 698 13244 0.1271 0.1404 -- 100.0
X Ray Diffraction 1.2304 1.2527 -- 715 13234 0.1247 0.1445 -- 100.0
X Ray Diffraction 1.2527 1.2768 -- 778 13194 0.1178 0.1294 -- 100.0
X Ray Diffraction 1.2768 1.3029 -- 713 13334 0.1103 0.1258 -- 100.0
X Ray Diffraction 1.3029 1.3312 -- 686 13229 0.1136 0.1276 -- 100.0
X Ray Diffraction 1.3312 1.3622 -- 693 13295 0.1123 0.1299 -- 100.0
X Ray Diffraction 1.3622 1.3963 -- 673 13325 0.1106 0.1226 -- 100.0
X Ray Diffraction 1.3963 1.434 -- 679 13349 0.1058 0.1203 -- 100.0
X Ray Diffraction 1.434 1.4762 -- 672 13391 0.1013 0.1088 -- 100.0
X Ray Diffraction 1.4762 1.5238 -- 668 13337 0.1007 0.114 -- 100.0
X Ray Diffraction 1.5238 1.5783 -- 620 13384 0.0989 0.1146 -- 100.0
X Ray Diffraction 1.5783 1.6415 -- 711 13282 0.1014 0.1133 -- 100.0
X Ray Diffraction 1.6415 1.7162 -- 680 13358 0.1052 0.1136 -- 100.0
X Ray Diffraction 1.7162 1.8067 -- 720 13358 0.1092 0.1146 -- 100.0
X Ray Diffraction 1.8067 1.9198 -- 736 13354 0.1118 0.1173 -- 100.0
X Ray Diffraction 1.9198 2.068 -- 727 13401 0.1115 0.1275 -- 100.0
X Ray Diffraction 2.068 2.2761 -- 747 13371 0.113 0.1281 -- 100.0
X Ray Diffraction 2.2761 2.6053 -- 750 13460 0.1202 0.127 -- 100.0
X Ray Diffraction 2.6053 3.2817 -- 784 13339 0.1426 0.1458 -- 99.0
X Ray Diffraction 3.2817 29.703 -- 710 12745 0.1463 0.143 -- 92.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 20.9905
RMS Deviations
Key Refinement Restraint Deviation
f_angle_d 0.999
f_dihedral_angle_d 13.766
f_chiral_restr 0.078
f_plane_restr 0.007
f_bond_d 0.007
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 5136
Nucleic Acid Atoms 0
Heterogen Atoms 0
Solvent Atoms 848

Software

Software
Software Name Purpose
HKL-2000 data scaling
PHENIX refinement version: (1.10_2152: ???)