X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
pH 6
Temperature 293.0
Details 2.2 M (NH4)2SO4, 0.1 M MES

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 73.35 α = 90
b = 73.35 β = 90
c = 277.28 γ = 120
Symmetry
Space Group P 61 2 2

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS 6M -- 2015-07-07
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON BESSY BEAMLINE 14.1 0.918 BESSY 14.1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.48 46.21 100.0 0.164 -- -- 10.7 -- 74847 -- -- 10.33
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.48 1.51 99.9 1.158 -- -- 10.7 3607

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.48 46.213 -- 1.35 -- 74699 3763 99.94 -- 0.1291 0.1276 0.157 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.48 1.4987 -- 133 2557 0.1764 0.2131 -- 100.0
X Ray Diffraction 1.4987 1.5185 -- 125 2575 0.1731 0.2138 -- 100.0
X Ray Diffraction 1.5185 1.5393 -- 139 2585 0.1666 0.2226 -- 100.0
X Ray Diffraction 1.5393 1.5613 -- 127 2591 0.1669 0.2176 -- 100.0
X Ray Diffraction 1.5613 1.5846 -- 148 2563 0.1542 0.2267 -- 100.0
X Ray Diffraction 1.5846 1.6093 -- 131 2570 0.1527 0.2014 -- 100.0
X Ray Diffraction 1.6093 1.6357 -- 137 2583 0.1523 0.1918 -- 100.0
X Ray Diffraction 1.6357 1.6639 -- 133 2585 0.1417 0.2004 -- 100.0
X Ray Diffraction 1.6639 1.6942 -- 143 2579 0.1383 0.187 -- 100.0
X Ray Diffraction 1.6942 1.7268 -- 117 2586 0.1313 0.1656 -- 100.0
X Ray Diffraction 1.7268 1.762 -- 152 2603 0.1258 0.1542 -- 100.0
X Ray Diffraction 1.762 1.8003 -- 134 2582 0.1195 0.1697 -- 100.0
X Ray Diffraction 1.8003 1.8422 -- 151 2596 0.1236 0.1623 -- 100.0
X Ray Diffraction 1.8422 1.8883 -- 134 2599 0.1228 0.164 -- 100.0
X Ray Diffraction 1.8883 1.9393 -- 127 2618 0.1118 0.1518 -- 100.0
X Ray Diffraction 1.9393 1.9964 -- 142 2596 0.1131 0.146 -- 100.0
X Ray Diffraction 1.9964 2.0608 -- 138 2604 0.1132 0.1374 -- 100.0
X Ray Diffraction 2.0608 2.1345 -- 154 2600 0.1116 0.1347 -- 100.0
X Ray Diffraction 2.1345 2.2199 -- 150 2627 0.1047 0.1371 -- 100.0
X Ray Diffraction 2.2199 2.321 -- 138 2620 0.1027 0.1203 -- 100.0
X Ray Diffraction 2.321 2.4433 -- 127 2685 0.1044 0.1338 -- 100.0
X Ray Diffraction 2.4433 2.5964 -- 134 2636 0.109 0.1401 -- 100.0
X Ray Diffraction 2.5964 2.7969 -- 138 2668 0.1189 0.142 -- 100.0
X Ray Diffraction 2.7969 3.0783 -- 154 2688 0.1278 0.1606 -- 100.0
X Ray Diffraction 3.0783 3.5236 -- 157 2693 0.1261 0.1558 -- 100.0
X Ray Diffraction 3.5236 4.4387 -- 148 2756 0.1186 0.1278 -- 100.0
X Ray Diffraction 4.4387 46.2352 -- 152 2991 0.1648 0.1794 -- 100.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 13.0975
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.007
f_chiral_restr 0.074
f_bond_d 0.008
f_angle_d 1.164
f_dihedral_angle_d 16.387
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 3086
Nucleic Acid Atoms 0
Heterogen Atoms 155
Solvent Atoms 510

Software

Software
Software Name Purpose
Aimless data scaling version: 0.5.12
PHENIX refinement
PDB_EXTRACT data extraction version: 3.20
XDS data reduction
PHASER phasing