X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion
Temperature 298.0
Details PEG 4000, tris

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 35.9 α = 78.56
b = 38.64 β = 69.67
c = 50.43 γ = 79.31
Symmetry
Space Group P 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
IMAGE PLATE RIGAKU RAXIS HTC -- 2014-10-12
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
ROTATING ANODE OTHER 1.5418 -- --

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.4 18 85.0 -- -- -- 1.4 -- 18999 -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.4 18.0 -- 1.97 -- 16318 832 65.09 -- 0.2205 0.2168 0.2535 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.4 2.4777 -- 159 1376 0.2506 0.3257 -- 62.0
X Ray Diffraction 2.4777 2.6082 -- 165 1442 0.2199 0.2694 -- 64.0
X Ray Diffraction 2.6082 2.7714 -- 157 1496 0.2473 0.3446 -- 65.0
X Ray Diffraction 2.7714 2.9852 -- 169 1471 0.211 0.2424 -- 65.0
X Ray Diffraction 2.9852 3.2851 -- 156 1471 0.2139 0.2435 -- 66.0
X Ray Diffraction 3.2851 3.7593 -- 170 1511 0.2145 0.2496 -- 68.0
X Ray Diffraction 3.7593 4.732 -- 173 1565 0.162 0.181 -- 69.0
X Ray Diffraction 4.732 26.6966 -- 179 1557 0.2151 0.2195 -- 69.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 20.0067
Anisotropic B[1][1] 2.1674
Anisotropic B[1][2] 3.5714
Anisotropic B[1][3] 2.7549
Anisotropic B[2][2] 0.9057
Anisotropic B[2][3] 0.1792
Anisotropic B[3][3] -3.073
RMS Deviations
Key Refinement Restraint Deviation
f_angle_d 0.658
f_plane_restr 0.003
f_dihedral_angle_d 13.116
f_chiral_restr 0.037
f_bond_d 0.003
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 1842
Nucleic Acid Atoms 0
Heterogen Atoms 0
Solvent Atoms 207

Software

Software
Software Name Purpose
MOSFLM data reduction
SCALA data scaling
MOLREP phasing
PHENIX refinement version: 1.6.4_486
PDB_EXTRACT data extraction version: 3.20