X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
Temperature 277.0
Details 7% PEG 8000, 25mM, BISTRIS-PROPANE, 50 MM AMMONIUM SULFATE, 5% GLYCEROL, 5% SUCROSE

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 90.32 α = 90
b = 129.07 β = 101
c = 131.54 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 270 -- 2015-02-02
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON CHESS BEAMLINE F1 0.9179 CHESS F1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.9 50 96.7 0.103 -- -- 4.0 -- 63660 -- -1.0 --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.9 2.95 89.0 0.686 -- 1.37 2.9 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.9 45.643 -- 1.38 -- 63560 2558 96.71 -- 0.2474 0.2464 0.2726 Random selection
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.9 2.9558 -- 124 3122 0.38 0.3518 -- 89.0
X Ray Diffraction 2.9558 3.0161 -- 141 3152 0.3703 0.394 -- 90.0
X Ray Diffraction 3.0161 3.0817 -- 137 3266 0.3612 0.3915 -- 93.0
X Ray Diffraction 3.0817 3.1533 -- 119 3318 0.3523 0.3324 -- 95.0
X Ray Diffraction 3.1533 3.2322 -- 135 3331 0.3429 0.3947 -- 95.0
X Ray Diffraction 3.2322 3.3195 -- 131 3326 0.3257 0.3626 -- 96.0
X Ray Diffraction 3.3195 3.4172 -- 153 3353 0.3091 0.3227 -- 96.0
X Ray Diffraction 3.4172 3.5275 -- 147 3400 0.2983 0.3264 -- 97.0
X Ray Diffraction 3.5275 3.6535 -- 141 3378 0.2798 0.3236 -- 97.0
X Ray Diffraction 3.6535 3.7997 -- 137 3429 0.2899 0.3247 -- 98.0
X Ray Diffraction 3.7997 3.9725 -- 136 3439 0.2592 0.3027 -- 99.0
X Ray Diffraction 3.9725 4.1818 -- 165 3438 0.2351 0.2492 -- 99.0
X Ray Diffraction 4.1818 4.4436 -- 160 3494 0.2247 0.226 -- 100.0
X Ray Diffraction 4.4436 4.7864 -- 149 3503 0.2113 0.2239 -- 100.0
X Ray Diffraction 4.7864 5.2674 -- 153 3509 0.2069 0.278 -- 100.0
X Ray Diffraction 5.2674 6.0282 -- 149 3500 0.2247 0.2836 -- 100.0
X Ray Diffraction 6.0282 7.5892 -- 148 3520 0.216 0.2396 -- 100.0
X Ray Diffraction 7.5892 45.6484 -- 133 3524 0.1741 0.182 -- 98.0
RMS Deviations
Key Refinement Restraint Deviation
f_chiral_restr 0.051
f_bond_d 0.007
f_plane_restr 0.006
f_angle_d 0.891
f_dihedral_angle_d 15.702
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 15804
Nucleic Acid Atoms 1440
Heterogen Atoms 134
Solvent Atoms 2

Software

Software
Software Name Purpose
PHENIX refinement version: (1.10_2155: ???)
HKL-2000 data reduction
SCALEPACK data scaling
PHENIX phasing