X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 6.4
Temperature 296.0
Details 0.1 M HEPES Buffer, 31% (v/v) Jeffamine M-600

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 97.31 α = 90
b = 97.31 β = 90
c = 97.62 γ = 120
Symmetry
Space Group P 61 2 2

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 133
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD RIGAKU SATURN 92 -- 2015-07-15
Diffraction Radiation
Monochromator Protocol
Cu SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
ROTATING ANODE RIGAKU MICROMAX-007 HF 1.54 -- --

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.3 28.09 100.0 0.05629 -- -- 2.0 -- 12701 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.295 2.377 99.0 0.4378 -- 1.41 2.0 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
-- 2.295 28.091 -- 1.34 -- 12695 1270 99.92 -- 0.2365 0.2335 0.2622 Random selection
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.295 2.3449 -- 144 1280 0.3794 0.3906 -- 99.0
X Ray Diffraction 2.3449 2.3994 -- 138 1285 0.3522 0.4212 -- 100.0
X Ray Diffraction 2.3994 2.4594 -- 147 1308 0.342 0.3653 -- 100.0
X Ray Diffraction 2.4594 2.5258 -- 146 1305 0.3447 0.3604 -- 100.0
X Ray Diffraction 2.5258 2.6001 -- 144 1314 0.3318 0.4008 -- 100.0
X Ray Diffraction 2.6001 2.684 -- 141 1281 0.3355 0.3858 -- 100.0
X Ray Diffraction 2.684 2.7798 -- 139 1312 0.2962 0.3397 -- 100.0
X Ray Diffraction 2.7798 2.891 -- 137 1299 0.2846 0.2993 -- 100.0
X Ray Diffraction 2.891 3.0224 -- 143 1315 0.2758 0.3425 -- 100.0
X Ray Diffraction 3.0224 3.1816 -- 144 1297 0.2414 0.326 -- 100.0
X Ray Diffraction 3.1816 3.3806 -- 144 1303 0.2581 0.2747 -- 100.0
X Ray Diffraction 3.3806 3.6411 -- 140 1294 0.236 0.2318 -- 100.0
X Ray Diffraction 3.6411 4.0066 -- 144 1301 0.2132 0.2278 -- 100.0
X Ray Diffraction 4.0066 4.5842 -- 141 1307 0.1675 0.1959 -- 100.0
X Ray Diffraction 4.5842 5.7674 -- 140 1318 0.1817 0.1974 -- 100.0
X Ray Diffraction 5.7674 28.093 -- 145 1302 0.2021 0.2352 -- 100.0
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.004
f_angle_d 0.934
f_bond_d 0.005
f_dihedral_angle_d 20.214
f_chiral_restr 0.046
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 936
Nucleic Acid Atoms 0
Heterogen Atoms 0
Solvent Atoms 37

Software

Software
Software Name Purpose
PHENIX refinement version: (1.10.1_2155: ???)
XDS data reduction
Aimless data scaling version: 0.5.17
PHASER phasing version: 1.10.1_2155