X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 5
Temperature 291.0
Details PEG 8000, Calcium Chloride, Sodium Acetate, Dimethylsulfoxide

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 168.97 α = 90
b = 83.71 β = 100.68
c = 88.88 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 80
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315r -- 2014-12-22
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ALS BEAMLINE 5.0.1 0.9770 ALS 5.0.1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.05 20 98.5 0.093 -- -- 3.8 -- 75324 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.05 2.08 97.2 0.445 -- 3.53 3.6 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.05 19.967 -- 1.36 -- 75318 3764 98.62 -- 0.1639 0.1621 0.1974 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.05 2.0759 -- 184 2541 0.2005 0.2168 -- 97.0
X Ray Diffraction 2.0759 2.1032 -- 0 2760 0.1978 1.0E7 -- 98.0
X Ray Diffraction 2.1032 2.132 -- 189 2563 0.1859 0.2268 -- 98.0
X Ray Diffraction 2.132 2.1624 -- 186 2550 0.1855 0.2583 -- 98.0
X Ray Diffraction 2.1624 2.1947 -- 186 2592 0.1835 0.2518 -- 98.0
X Ray Diffraction 2.1947 2.2289 -- 0 2764 0.1767 1.0E7 -- 98.0
X Ray Diffraction 2.2289 2.2654 -- 183 2577 0.1687 0.2249 -- 98.0
X Ray Diffraction 2.2654 2.3044 -- 188 2576 0.1771 0.2539 -- 98.0
X Ray Diffraction 2.3044 2.3463 -- 187 2581 0.1716 0.2296 -- 98.0
X Ray Diffraction 2.3463 2.3913 -- 0 2775 0.1743 1.0E7 -- 99.0
X Ray Diffraction 2.3913 2.44 -- 188 2578 0.1655 0.2075 -- 98.0
X Ray Diffraction 2.44 2.493 -- 188 2601 0.1633 0.1976 -- 99.0
X Ray Diffraction 2.493 2.5509 -- 187 2607 0.175 0.1993 -- 99.0
X Ray Diffraction 2.5509 2.6145 -- 0 2801 0.1685 1.0E7 -- 99.0
X Ray Diffraction 2.6145 2.6851 -- 189 2578 0.1588 0.2188 -- 99.0
X Ray Diffraction 2.6851 2.7639 -- 189 2590 0.1491 0.1757 -- 99.0
X Ray Diffraction 2.7639 2.8529 -- 190 2614 0.1592 0.1888 -- 99.0
X Ray Diffraction 2.8529 2.9545 -- 0 2800 0.1675 1.0E7 -- 99.0
X Ray Diffraction 2.9545 3.0724 -- 189 2580 0.1754 0.2149 -- 99.0
X Ray Diffraction 3.0724 3.2117 -- 190 2627 0.1588 0.2168 -- 99.0
X Ray Diffraction 3.2117 3.3802 -- 53 2755 0.1546 0.1805 -- 99.0
X Ray Diffraction 3.3802 3.5909 -- 136 2678 0.1567 0.1991 -- 99.0
X Ray Diffraction 3.5909 3.8663 -- 191 2614 0.1553 0.1841 -- 99.0
X Ray Diffraction 3.8663 4.252 -- 190 2645 0.1401 0.1549 -- 99.0
X Ray Diffraction 4.252 4.8595 -- 0 2822 0.1223 1.0E7 -- 99.0
X Ray Diffraction 4.8595 6.0934 -- 190 2662 0.1686 0.1429 -- 99.0
X Ray Diffraction 6.0934 19.9677 -- 191 2723 0.1754 0.2026 -- 100.0
Temperature Factor Modeling
Temperature Factor Value
Anisotropic B[1][1] -0.6854
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.3962
Anisotropic B[2][2] -2.3175
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 3.0029
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.005
f_bond_d 0.007
f_chiral_restr 0.076
f_dihedral_angle_d 14.602
f_angle_d 1.129
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 9422
Nucleic Acid Atoms 0
Heterogen Atoms 120
Solvent Atoms 753

Software

Software
Software Name Purpose
PHENIX refinement version: 1.7.3_928
XDS data reduction version: January 10, 2014
XSCALE data scaling version: January 10, 2014
PHENIX phasing version: 1.7.3_928