X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 7
Temperature 298.0
Details 1.6 M Lithium Sulfate, 0.1 M Bis Tris Propane pH 7.0

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 98.35 α = 90
b = 137.19 β = 103.05
c = 153.07 γ = 90
Symmetry
Space Group I 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS 6M -- 2012-03-17
Diffraction Radiation
Monochromator Protocol
Si(111) SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON NSLS BEAMLINE X25 1.09999 NSLS X25

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.05 40.93 95.2 0.097 -- -- 2.7 -- 117637 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.05 2.09 86.3 0.324 -- 1.9 2.3 5271

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.05 40.925 -- 1.35 -- 117417 5893 94.98 -- 0.2182 0.2172 0.2374 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.05 2.0733 -- 161 3366 0.2549 0.2861 -- 87.0
X Ray Diffraction 2.0733 2.0977 -- 152 3348 0.2417 0.2669 -- 85.0
X Ray Diffraction 2.0977 2.1233 -- 181 3362 0.2309 0.2606 -- 86.0
X Ray Diffraction 2.1233 2.1502 -- 179 3380 0.2301 0.2675 -- 88.0
X Ray Diffraction 2.1502 2.1784 -- 178 3478 0.2258 0.2504 -- 89.0
X Ray Diffraction 2.1784 2.2083 -- 188 3412 0.2318 0.2744 -- 88.0
X Ray Diffraction 2.2083 2.2398 -- 179 3464 0.2354 0.2428 -- 89.0
X Ray Diffraction 2.2398 2.2733 -- 212 3494 0.2326 0.2629 -- 90.0
X Ray Diffraction 2.2733 2.3088 -- 191 3565 0.2372 0.2814 -- 91.0
X Ray Diffraction 2.3088 2.3466 -- 175 3626 0.2311 0.2251 -- 93.0
X Ray Diffraction 2.3466 2.3871 -- 199 3662 0.2356 0.2961 -- 94.0
X Ray Diffraction 2.3871 2.4305 -- 201 3714 0.2373 0.2535 -- 95.0
X Ray Diffraction 2.4305 2.4772 -- 228 3730 0.2442 0.2817 -- 96.0
X Ray Diffraction 2.4772 2.5278 -- 188 3786 0.2433 0.252 -- 97.0
X Ray Diffraction 2.5278 2.5827 -- 217 3794 0.2418 0.2539 -- 98.0
X Ray Diffraction 2.5827 2.6428 -- 185 3851 0.2369 0.3057 -- 98.0
X Ray Diffraction 2.6428 2.7089 -- 172 3887 0.2494 0.3087 -- 99.0
X Ray Diffraction 2.7089 2.7821 -- 195 3898 0.2471 0.2673 -- 100.0
X Ray Diffraction 2.7821 2.864 -- 197 3929 0.2375 0.2703 -- 100.0
X Ray Diffraction 2.864 2.9564 -- 216 3890 0.2276 0.2353 -- 99.0
X Ray Diffraction 2.9564 3.062 -- 215 3836 0.2238 0.2385 -- 99.0
X Ray Diffraction 3.062 3.1846 -- 197 3922 0.2263 0.2584 -- 100.0
X Ray Diffraction 3.1846 3.3294 -- 212 3851 0.2141 0.2438 -- 98.0
X Ray Diffraction 3.3294 3.5049 -- 220 3841 0.2026 0.2107 -- 99.0
X Ray Diffraction 3.5049 3.7243 -- 222 3856 0.1918 0.2029 -- 99.0
X Ray Diffraction 3.7243 4.0117 -- 194 3924 0.1813 0.188 -- 99.0
X Ray Diffraction 4.0117 4.4149 -- 210 3877 0.1747 0.1993 -- 98.0
X Ray Diffraction 4.4149 5.0528 -- 182 3913 0.1844 0.2059 -- 99.0
X Ray Diffraction 5.0528 6.3621 -- 227 3902 0.2189 0.2208 -- 99.0
X Ray Diffraction 6.3621 40.9332 -- 220 3966 0.2342 0.2334 -- 99.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 32.3017
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.005
f_dihedral_angle_d 11.856
f_bond_d 0.004
f_angle_d 0.661
f_chiral_restr 0.045
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 11018
Nucleic Acid Atoms 0
Heterogen Atoms 93
Solvent Atoms 772

Software

Software
Software Name Purpose
SCALA data scaling version: 0.5.12
PHENIX refinement
PDB_EXTRACT data extraction version: 3.15
PHASER phasing
CBASS data collection
iMOSFLM data reduction