X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
Temperature 277.0
Details 15% PEG 3350, 200mM Na/K tartrate, 100mM Hepes

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 86.27 α = 90
b = 89.35 β = 90
c = 131.32 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS3 6M -- 2013-10-05
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 17-ID 1 APS 17-ID

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.6 131.32 99.3 -- -- -- 6.7 -- 132581 -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
-- 1.602 72.1 -- 0.0 -- 131113 5255 97.8 -- 0.1769 0.1763 0.1924 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.6 1.64 -- 369 8652 0.1919 0.2142 -- 92.04
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 20.4182
Anisotropic B[1][1] 3.0774
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] -4.6977
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 1.6203
RMS Deviations
Key Refinement Restraint Deviation
t_omega_torsion 4.52
t_bond_d 0.01
t_angle_deg 1.08
t_other_torsion 14.22
Coordinate Error
Parameter Value
Luzzati ESD (Observed) 0.197
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 6028
Nucleic Acid Atoms 0
Heterogen Atoms 60
Solvent Atoms 879

Software

Software
Software Name Purpose
PDB_EXTRACT data extraction version: 3.10
XDS data reduction
SCALA data scaling
BUSTER refinement version: 2.11.6
AMoRE phasing