X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion
Temperature 289.0
Details 0.2 M Zinc Acetate, 0.1 M Imidazole: HCl pH 8.0, 20% (v/v) 1,4-Butanediol

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 55.42 α = 90
b = 79.24 β = 111.24
c = 70.94 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS3 2M -- 2016-04-27
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SSRF BEAMLINE BL19U1 0.97853 SSRF BL19U1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.8 39.6 84.6 0.079 -- -- 2.5 -- 12009 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.8 2.85 -- -- -- -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.8 39.6 -- 1.38 -- 12009 634 84.58 -- 0.2392 0.2371 0.2759 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.8001 3.0162 -- 129 2315 0.2673 0.3283 -- 87.0
X Ray Diffraction 3.0162 3.3196 -- 113 2284 0.2588 0.3099 -- 85.0
X Ray Diffraction 3.3196 3.7996 -- 137 2310 0.2422 0.2852 -- 87.0
X Ray Diffraction 3.7996 4.7858 -- 127 2246 0.2028 0.2209 -- 84.0
X Ray Diffraction 4.7858 39.6219 -- 128 2220 0.2514 0.3018 -- 81.0
RMS Deviations
Key Refinement Restraint Deviation
f_angle_d 0.465
f_plane_restr 0.002
f_bond_d 0.004
f_chiral_restr 0.035
f_dihedral_angle_d 21.457
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 3680
Nucleic Acid Atoms 0
Heterogen Atoms 0
Solvent Atoms 7

Software

Software
Software Name Purpose
PHENIX refinement version: (1.10.1_2155: ???)
HKL-3000 data reduction
HKL-3000 data scaling
PHENIX phasing