X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 7
Temperature 277.15
Details 0.1M HEPES pH 7.0, 30% v/v Jeffamine ED-2001

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 49.28 α = 90
b = 114.22 β = 90
c = 123.38 γ = 90
Symmetry
Space Group P 2 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315r -- 2016-07-08
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SSRF BEAMLINE BL17U 0.97915 SSRF BL17U

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.7 50 99.9 -- -- -- 11.4 -- 19777 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
-- -- -- -- -- -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.7 29.779 -- 0.0 -- 18621 1869 93.96 -- 0.2039 0.1997 0.2411 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.7001 2.7731 -- 129 1112 0.2631 0.3203 -- 84.0
X Ray Diffraction 2.7731 2.8546 -- 115 1151 0.2596 0.3419 -- 85.0
X Ray Diffraction 2.8546 2.9467 -- 146 1172 0.2618 0.3322 -- 87.0
X Ray Diffraction 2.9467 3.0519 -- 136 1207 0.2545 0.3112 -- 90.0
X Ray Diffraction 3.0519 3.174 -- 128 1273 0.2382 0.2958 -- 93.0
X Ray Diffraction 3.174 3.3183 -- 148 1269 0.2334 0.2619 -- 94.0
X Ray Diffraction 3.3183 3.4929 -- 146 1289 0.2138 0.2931 -- 95.0
X Ray Diffraction 3.4929 3.7114 -- 146 1320 0.2052 0.2356 -- 98.0
X Ray Diffraction 3.7114 3.9973 -- 152 1348 0.182 0.2293 -- 98.0
X Ray Diffraction 3.9973 4.3985 -- 146 1358 0.1704 0.2007 -- 99.0
X Ray Diffraction 4.3985 5.0323 -- 158 1368 0.1557 0.1885 -- 99.0
X Ray Diffraction 5.0323 6.3301 -- 152 1407 0.1822 0.182 -- 99.0
X Ray Diffraction 6.3301 29.7805 -- 167 1478 0.1863 0.2408 -- 100.0
RMS Deviations
Key Refinement Restraint Deviation
f_chiral_restr 0.059
f_bond_d 0.01
f_plane_restr 0.005
f_angle_d 1.191
f_dihedral_angle_d 15.189
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 4207
Nucleic Acid Atoms 0
Heterogen Atoms 120
Solvent Atoms 47

Software

Software
Software Name Purpose
PHENIX refinement version: 1.9_1692
HKL-3000 data reduction
HKL-3000 data scaling
PHASER phasing