X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
Temperature 289.0
Details 0.2M Magnesium acetate tetrahydrate, 0.1M Sodium cacodylate trihydrate PH6.5, 20% PEG 8000

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 38.24 α = 98.15
b = 38.26 β = 98.15
c = 48 γ = 109.67
Symmetry
Space Group P 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS 6M -- 2016-07-15
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 21-ID-E 0.9792 APS 21-ID-E

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.15 35.28 77.0 0.034 -- -- 1.93 -- 67808 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.15 1.19 -- 0.604 -- -- 1.9 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.15 35.275 -- 1.96 -- 67778 3287 76.66 -- 0.2031 0.2021 0.2215 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.1495 1.1667 -- 41 661 0.3216 0.3062 -- 18.0
X Ray Diffraction 1.1667 1.1849 -- 59 991 0.311 0.3251 -- 27.0
X Ray Diffraction 1.1849 1.2043 -- 53 1378 0.3 0.3193 -- 37.0
X Ray Diffraction 1.2043 1.2251 -- 70 1860 0.2853 0.2347 -- 50.0
X Ray Diffraction 1.2251 1.2474 -- 123 2572 0.2886 0.2891 -- 71.0
X Ray Diffraction 1.2474 1.2714 -- 160 2903 0.2652 0.308 -- 79.0
X Ray Diffraction 1.2714 1.2973 -- 149 3169 0.2707 0.3134 -- 86.0
X Ray Diffraction 1.2973 1.3255 -- 175 3074 0.2566 0.2588 -- 85.0
X Ray Diffraction 1.3255 1.3564 -- 165 2912 0.2482 0.271 -- 80.0
X Ray Diffraction 1.3564 1.3903 -- 142 3147 0.2451 0.2561 -- 86.0
X Ray Diffraction 1.3903 1.4279 -- 178 3216 0.2219 0.2481 -- 88.0
X Ray Diffraction 1.4279 1.4699 -- 174 3188 0.2152 0.2299 -- 87.0
X Ray Diffraction 1.4699 1.5173 -- 160 3135 0.2089 0.1974 -- 87.0
X Ray Diffraction 1.5173 1.5716 -- 163 3074 0.2018 0.2307 -- 83.0
X Ray Diffraction 1.5716 1.6345 -- 137 3095 0.1972 0.2599 -- 84.0
X Ray Diffraction 1.6345 1.7089 -- 180 3228 0.1966 0.2205 -- 90.0
X Ray Diffraction 1.7089 1.799 -- 158 3263 0.1949 0.2004 -- 89.0
X Ray Diffraction 1.799 1.9117 -- 157 3309 0.1971 0.1894 -- 88.0
X Ray Diffraction 1.9117 2.0592 -- 167 3045 0.186 0.2137 -- 85.0
X Ray Diffraction 2.0592 2.2664 -- 179 3406 0.1869 0.2244 -- 93.0
X Ray Diffraction 2.2664 2.5943 -- 171 3302 0.1981 0.2201 -- 90.0
X Ray Diffraction 2.5943 3.2682 -- 153 3210 0.1974 0.2194 -- 88.0
X Ray Diffraction 3.2682 35.2918 -- 173 3353 0.18 0.1942 -- 92.0
RMS Deviations
Key Refinement Restraint Deviation
f_dihedral_angle_d 22.081
f_bond_d 0.006
f_plane_restr 0.006
f_chiral_restr 0.077
f_angle_d 0.98
Coordinate Error
Parameter Value
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 2404
Nucleic Acid Atoms 0
Heterogen Atoms 1
Solvent Atoms 340

Software

Software
Software Name Purpose
PHENIX refinement version: (1.10.1_2155: ???)