X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
pH 7.5
Temperature 295.0
Details 100 MM HEPES PH 7.5, 18% PEG 4000 AT 295 K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 92.86 α = 90
b = 188.02 β = 96.44
c = 109.5 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS 6M MIRRORS 2015-10-27
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) -- PETRA III, EMBL c/o DESY P13 (MX1)

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.4 71.14 99.7 0.08 -- -- 5.3 -- 144950 -- -3.0 62.262
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.4 2.53 99.6 0.77 -- 2.02 5.1 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.4 71.14 -- -- -- 137701 7248 99.74 -- 0.18043 0.17912 0.2051 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.4 2.462 -- 534 10152 0.3 0.319 -- 99.59
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 67.18
Anisotropic B[1][1] 0.97
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] -0.33
Anisotropic B[2][2] -1.01
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 0.12
RMS Deviations
Key Refinement Restraint Deviation
r_dihedral_angle_2_deg 36.055
r_dihedral_angle_3_deg 15.055
r_mcbond_other 2.002
r_bond_refined_d 0.013
r_gen_planes_refined 0.009
r_scbond_it 2.379
r_angle_refined_deg 1.562
r_mcangle_it 3.201
r_dihedral_angle_4_deg 18.059
r_angle_other_deg 1.282
r_chiral_restr 0.085
r_mcbond_it 2.003
r_dihedral_angle_1_deg 6.036
r_gen_planes_other 0.007
r_bond_other_d 0.008
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 24570
Nucleic Acid Atoms 0
Heterogen Atoms 0
Solvent Atoms 517

Software

Software
Software Name Purpose
REFMAC refinement version: 5.8.0135
XDS data reduction
XDS data scaling
PHASER phasing