X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
Temperature 293.0
Details 0.1 M MES pH 6.0, MPD 40%

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 81.42 α = 90
b = 71.82 β = 111.96
c = 94.18 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD RAYONIX MX-300 -- 2015-02-11
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON CLSI BEAMLINE 08ID-1 0.9795 CLSI 08ID-1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.75 50 98.7 -- -- -- 4.6 -- 100375 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.75 1.8 97.7 0.86 -- 2.2 -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
SAD 1.75 48.805 -- 1.37 -- 100369 5086 98.76 -- 0.1634 0.162 0.1901 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.7501 1.7699 -- 198 3139 0.2796 0.3142 -- 98.0
X Ray Diffraction 1.7699 1.7908 -- 172 3075 0.2651 0.2905 -- 98.0
X Ray Diffraction 1.7908 1.8126 -- 175 3143 0.2506 0.3108 -- 98.0
X Ray Diffraction 1.8126 1.8356 -- 176 3108 0.2443 0.3085 -- 98.0
X Ray Diffraction 1.8356 1.8597 -- 158 3128 0.2228 0.2882 -- 98.0
X Ray Diffraction 1.8597 1.8852 -- 170 3187 0.2011 0.2306 -- 98.0
X Ray Diffraction 1.8852 1.9121 -- 171 3128 0.1997 0.2418 -- 98.0
X Ray Diffraction 1.9121 1.9407 -- 157 3180 0.1916 0.198 -- 98.0
X Ray Diffraction 1.9407 1.971 -- 142 3127 0.1778 0.1974 -- 98.0
X Ray Diffraction 1.971 2.0033 -- 151 3196 0.1749 0.2086 -- 99.0
X Ray Diffraction 2.0033 2.0378 -- 149 3172 0.1704 0.2155 -- 99.0
X Ray Diffraction 2.0378 2.0749 -- 193 3097 0.1719 0.2089 -- 98.0
X Ray Diffraction 2.0749 2.1148 -- 169 3155 0.1633 0.1882 -- 98.0
X Ray Diffraction 2.1148 2.158 -- 176 3143 0.1595 0.2163 -- 99.0
X Ray Diffraction 2.158 2.2049 -- 169 3177 0.1528 0.1896 -- 99.0
X Ray Diffraction 2.2049 2.2562 -- 182 3162 0.1551 0.1894 -- 99.0
X Ray Diffraction 2.2562 2.3126 -- 161 3189 0.1531 0.1953 -- 99.0
X Ray Diffraction 2.3126 2.3751 -- 146 3175 0.1543 0.1593 -- 99.0
X Ray Diffraction 2.3751 2.445 -- 189 3141 0.1602 0.197 -- 99.0
X Ray Diffraction 2.445 2.5239 -- 165 3236 0.161 0.186 -- 99.0
X Ray Diffraction 2.5239 2.6141 -- 167 3166 0.1592 0.1967 -- 99.0
X Ray Diffraction 2.6141 2.7188 -- 173 3195 0.1597 0.1753 -- 99.0
X Ray Diffraction 2.7188 2.8425 -- 170 3198 0.1602 0.1887 -- 99.0
X Ray Diffraction 2.8425 2.9924 -- 177 3205 0.1679 0.1931 -- 99.0
X Ray Diffraction 2.9924 3.1798 -- 175 3203 0.1614 0.2092 -- 100.0
X Ray Diffraction 3.1798 3.4253 -- 178 3206 0.1579 0.1749 -- 100.0
X Ray Diffraction 3.4253 3.7699 -- 166 3230 0.1486 0.1973 -- 100.0
X Ray Diffraction 3.7699 4.3151 -- 155 3247 0.1369 0.146 -- 100.0
X Ray Diffraction 4.3151 5.4354 -- 168 3270 0.1472 0.1671 -- 100.0
X Ray Diffraction 5.4354 48.8241 -- 188 3305 0.1685 0.1807 -- 99.0
RMS Deviations
Key Refinement Restraint Deviation
f_dihedral_angle_d 14.286
f_plane_restr 0.005
f_bond_d 0.007
f_angle_d 0.848
f_chiral_restr 0.05
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 6232
Nucleic Acid Atoms 0
Heterogen Atoms 44
Solvent Atoms 632

Software

Software
Software Name Purpose
PHENIX refinement version: (1.10.1_2155: ???)
XDS data reduction
XDS data scaling
HKL-3000 phasing