X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 10.5
Temperature 277.0
Details 2 M ammonium sulfate, 100 mM CAPS buffer (pH 10.5), 200 mM lithium sulfate

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 61.8 α = 90
b = 86.96 β = 90
c = 186.12 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315r -- 2015-04-05
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 19-ID 0.98 APS 19-ID

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.81 39.4 99.2 -- 0.098 -- 10.4 -- 90846 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.81 1.88 91.6 0.574 -- 2.3 11.0 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.814 39.394 -- 1.35 -- 90846 4546 99.16 -- 0.1859 0.1844 0.2139 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.8139 1.8345 -- 120 2106 0.2372 0.2546 -- 75.0
X Ray Diffraction 1.8345 1.8561 -- 152 2842 0.2499 0.3201 -- 100.0
X Ray Diffraction 1.8561 1.8787 -- 137 2906 0.2329 0.2807 -- 100.0
X Ray Diffraction 1.8787 1.9025 -- 154 2852 0.2261 0.2664 -- 100.0
X Ray Diffraction 1.9025 1.9276 -- 143 2885 0.2276 0.2677 -- 100.0
X Ray Diffraction 1.9276 1.954 -- 146 2849 0.2163 0.2479 -- 100.0
X Ray Diffraction 1.954 1.9819 -- 152 2896 0.2091 0.2338 -- 100.0
X Ray Diffraction 1.9819 2.0115 -- 155 2838 0.2106 0.2506 -- 100.0
X Ray Diffraction 2.0115 2.0429 -- 150 2862 0.1989 0.2297 -- 100.0
X Ray Diffraction 2.0429 2.0764 -- 155 2883 0.1949 0.2196 -- 100.0
X Ray Diffraction 2.0764 2.1122 -- 139 2894 0.1927 0.2136 -- 100.0
X Ray Diffraction 2.1122 2.1506 -- 142 2869 0.1904 0.2446 -- 100.0
X Ray Diffraction 2.1506 2.1919 -- 157 2878 0.1922 0.2415 -- 100.0
X Ray Diffraction 2.1919 2.2367 -- 163 2869 0.1981 0.2518 -- 100.0
X Ray Diffraction 2.2367 2.2853 -- 151 2913 0.1911 0.2367 -- 100.0
X Ray Diffraction 2.2853 2.3385 -- 139 2851 0.1844 0.2344 -- 100.0
X Ray Diffraction 2.3385 2.3969 -- 135 2920 0.1844 0.2276 -- 100.0
X Ray Diffraction 2.3969 2.4617 -- 153 2882 0.1837 0.2135 -- 100.0
X Ray Diffraction 2.4617 2.5342 -- 134 2912 0.1897 0.2323 -- 100.0
X Ray Diffraction 2.5342 2.6159 -- 164 2895 0.1856 0.2289 -- 100.0
X Ray Diffraction 2.6159 2.7094 -- 130 2923 0.1905 0.2232 -- 100.0
X Ray Diffraction 2.7094 2.8179 -- 171 2901 0.1932 0.1942 -- 100.0
X Ray Diffraction 2.8179 2.9461 -- 160 2904 0.191 0.2565 -- 100.0
X Ray Diffraction 2.9461 3.1013 -- 164 2895 0.1841 0.2178 -- 100.0
X Ray Diffraction 3.1013 3.2956 -- 162 2901 0.1865 0.2225 -- 100.0
X Ray Diffraction 3.2956 3.5499 -- 152 2941 0.1705 0.1721 -- 100.0
X Ray Diffraction 3.5499 3.9068 -- 136 2964 0.1645 0.1757 -- 100.0
X Ray Diffraction 3.9068 4.4715 -- 172 2965 0.1532 0.2107 -- 100.0
X Ray Diffraction 4.4715 5.631 -- 186 2983 0.166 0.192 -- 100.0
X Ray Diffraction 5.631 39.403 -- 172 3121 0.1954 0.1906 -- 100.0
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.006
f_angle_d 1.009
f_dihedral_angle_d 16.223
f_chiral_restr 0.059
f_bond_d 0.008
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 7540
Nucleic Acid Atoms 0
Heterogen Atoms 194
Solvent Atoms 445

Software

Software
Software Name Purpose
PHENIX refinement version: (1.10.1_2155: ???)
HKL-3000 data collection
SCALEPACK data scaling
PHASER phasing
PDB_EXTRACT data extraction version: 3.15
HKL-3000 data reduction