X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
Temperature 298.0
Details 200 mM ammonium sulfate, 16% PEG 3350, 16% glycerol

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 99.79 α = 90
b = 152.65 β = 90
c = 154.12 γ = 90
Symmetry
Space Group I 2 2 2

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD RAYONIX MX-300 -- 2014-05-30
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON CLSI BEAMLINE 08ID-1 0.9795 CLSI 08ID-1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.55 48.69 100.0 0.07037 0.0756 16.2 7.5 -- 169434 0.0 1.5 --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.55 1.605 100.0 0.43 -- 1.93 7.4 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.55 48.69 -- 1.34 -- 169424 8471 99.97 -- 0.1423 0.1414 0.1596 Random
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.55 1.5676 -- 278 5287 0.2981 0.3274 -- 100.0
X Ray Diffraction 1.5676 1.5861 -- 280 5319 0.2671 0.2872 -- 100.0
X Ray Diffraction 1.5861 1.6054 -- 280 5323 0.2411 0.2542 -- 100.0
X Ray Diffraction 1.6054 1.6257 -- 279 5287 0.2384 0.2558 -- 100.0
X Ray Diffraction 1.6257 1.6471 -- 280 5324 0.2165 0.2617 -- 100.0
X Ray Diffraction 1.6471 1.6697 -- 283 5376 0.2072 0.2115 -- 100.0
X Ray Diffraction 1.6697 1.6935 -- 280 5323 0.1968 0.2189 -- 100.0
X Ray Diffraction 1.6935 1.7188 -- 279 5298 0.1759 0.199 -- 100.0
X Ray Diffraction 1.7188 1.7457 -- 280 5341 0.1761 0.2101 -- 100.0
X Ray Diffraction 1.7457 1.7743 -- 282 5366 0.1688 0.1901 -- 100.0
X Ray Diffraction 1.7743 1.8049 -- 280 5305 0.1618 0.188 -- 100.0
X Ray Diffraction 1.8049 1.8377 -- 282 5360 0.1538 0.1868 -- 100.0
X Ray Diffraction 1.8377 1.8731 -- 279 5303 0.1463 0.1877 -- 100.0
X Ray Diffraction 1.8731 1.9113 -- 281 5340 0.1429 0.1671 -- 100.0
X Ray Diffraction 1.9113 1.9529 -- 282 5368 0.1391 0.1745 -- 100.0
X Ray Diffraction 1.9529 1.9983 -- 281 5333 0.1388 0.1797 -- 100.0
X Ray Diffraction 1.9983 2.0483 -- 281 5338 0.138 0.1704 -- 100.0
X Ray Diffraction 2.0483 2.1036 -- 282 5366 0.1338 0.1654 -- 100.0
X Ray Diffraction 2.1036 2.1655 -- 282 5358 0.1298 0.1622 -- 100.0
X Ray Diffraction 2.1655 2.2354 -- 282 5344 0.1313 0.1543 -- 100.0
X Ray Diffraction 2.2354 2.3153 -- 282 5364 0.1304 0.1573 -- 100.0
X Ray Diffraction 2.3153 2.408 -- 282 5361 0.1381 0.1631 -- 100.0
X Ray Diffraction 2.408 2.5176 -- 283 5370 0.1362 0.1465 -- 100.0
X Ray Diffraction 2.5176 2.6504 -- 284 5403 0.1394 0.1502 -- 100.0
X Ray Diffraction 2.6504 2.8164 -- 283 5363 0.1345 0.1588 -- 100.0
X Ray Diffraction 2.8164 3.0338 -- 285 5419 0.1341 0.1464 -- 100.0
X Ray Diffraction 3.0338 3.3391 -- 285 5425 0.1323 0.1456 -- 100.0
X Ray Diffraction 3.3391 3.8221 -- 287 5457 0.1238 0.1374 -- 100.0
X Ray Diffraction 3.8221 4.8147 -- 288 5472 0.1139 0.1204 -- 100.0
X Ray Diffraction 4.8147 48.7139 -- 299 5660 0.1499 0.1571 -- 100.0
RMS Deviations
Key Refinement Restraint Deviation
f_bond_d 0.02
f_plane_restr 0.01
f_angle_d 1.753
f_chiral_restr 0.101
f_dihedral_angle_d 14.308
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 6548
Nucleic Acid Atoms 0
Heterogen Atoms 81
Solvent Atoms 856

Software

Software
Software Name Purpose
PHENIX refinement version: 1.8.4_1496
XDS data reduction
XDS data scaling
PHENIX phasing