X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 7
Temperature 292.0
Details 15% MPD, 0.1 M NaCl, 0.1 M HEPES, pH 7.0

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 211.34 α = 90
b = 103.76 β = 119.03
c = 190.95 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD MARMOSAIC 300 mm CCD -- 2011-10-16
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 21-ID-F 0.97856 APS 21-ID-F

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
3.88 50 95.0 0.202 -- -- 3.5 -- 28480 -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 3.885 47.704 -- 0.15 -- 22928 1189 68.23 -- 0.2247 0.222 0.2753 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 3.8848 4.0615 -- 58 981 0.2572 0.2739 -- 25.0
X Ray Diffraction 4.0615 4.2755 -- 117 1867 0.2218 0.287 -- 48.0
X Ray Diffraction 4.2755 4.5432 -- 142 2359 0.2016 0.2643 -- 60.0
X Ray Diffraction 4.5432 4.8937 -- 163 2726 0.1927 0.2627 -- 69.0
X Ray Diffraction 4.8937 5.3855 -- 163 2943 0.2058 0.2837 -- 74.0
X Ray Diffraction 5.3855 6.1634 -- 163 3186 0.2366 0.3086 -- 80.0
X Ray Diffraction 6.1634 7.7598 -- 189 3737 0.2487 0.2957 -- 93.0
X Ray Diffraction 7.7598 47.7071 -- 194 3940 0.2228 0.2561 -- 96.0
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.005
f_bond_d 0.005
f_dihedral_angle_d 17.454
f_angle_d 1.304
f_chiral_restr 0.054
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 15552
Nucleic Acid Atoms 0
Heterogen Atoms 2
Solvent Atoms 0

Software

Software
Software Name Purpose
PHENIX refinement version: 1.8.2_1309
SCALEPACK data scaling
PHASER phasing
PDB_EXTRACT data extraction version: 3.15