X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 7
Temperature 293.0
Details MOPS-Na, Na-Formate, PEG 4000, Ethyleneglycol

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 153.48 α = 90
b = 43.45 β = 100.53
c = 42.32 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD RIGAKU JUPITER 210 -- 2009-03-04
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SPRING-8 BEAMLINE BL38B1 1.0 SPring-8 BL38B1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.2 50 98.1 -- -- -- 3.6 -- 14125 -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
-- 2.2 50.0 -- -- -- 13166 694 98.1 -- 0.21623 0.21394 0.25993 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.202 2.259 -- 43 826 0.306 0.32 -- 83.4
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 81.947
Anisotropic B[1][1] -4.5
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 1.7
Anisotropic B[2][2] 3.65
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 0.21
RMS Deviations
Key Refinement Restraint Deviation
r_scangle_other 7.225
r_long_range_B_other 9.314
r_scbond_other 4.565
r_mcangle_other 6.195
r_bond_refined_d 0.013
r_angle_other_deg 3.366
r_gen_planes_other 0.027
r_bond_other_d 0.0
r_mcbond_other 4.075
r_long_range_B_refined 9.316
r_mcangle_it 6.197
r_dihedral_angle_3_deg 20.086
r_scbond_it 4.567
r_dihedral_angle_1_deg 4.761
r_dihedral_angle_2_deg 37.533
r_dihedral_angle_4_deg 19.592
r_mcbond_it 4.083
r_angle_refined_deg 1.672
r_chiral_restr 0.083
r_gen_planes_refined 0.013
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 2005
Nucleic Acid Atoms 0
Heterogen Atoms 33
Solvent Atoms 35

Software

Software
Software Name Purpose
REFMAC refinement version: 5.8.0049
HKL-2000 data reduction
HKL-2000 data scaling