X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 6.5
Temperature 293.0
Details 2 M ammonium sulfate, 0.1 M MES

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 47.01 α = 90
b = 62.29 β = 90
c = 88.48 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 210r -- 2014-05-18
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A 1 Photon Factory AR-NW12A

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.7 44.2 96.0 -- -- -- 4.7 -- 28155 -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
-- 1.7 36.068 -- 1.39 -- 28134 1414 96.06 -- 0.181 0.1791 0.2162 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.7002 1.7609 -- 141 2512 0.2208 0.2579 -- 92.0
X Ray Diffraction 1.7609 1.8314 -- 137 2548 0.206 0.2332 -- 93.0
X Ray Diffraction 1.8314 1.9148 -- 111 2581 0.1916 0.2353 -- 94.0
X Ray Diffraction 1.9148 2.0157 -- 124 2640 0.1761 0.2107 -- 95.0
X Ray Diffraction 2.0157 2.142 -- 147 2635 0.1624 0.2091 -- 96.0
X Ray Diffraction 2.142 2.3073 -- 134 2702 0.1629 0.2061 -- 97.0
X Ray Diffraction 2.3073 2.5395 -- 151 2675 0.18 0.2267 -- 98.0
X Ray Diffraction 2.5395 2.9068 -- 171 2729 0.1828 0.2189 -- 98.0
X Ray Diffraction 2.9068 3.6617 -- 147 2784 0.1741 0.2218 -- 99.0
X Ray Diffraction 3.6617 36.0759 -- 151 2914 0.1799 0.2018 -- 98.0
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.005
f_angle_d 1.086
f_chiral_restr 0.075
f_dihedral_angle_d 14.583
f_bond_d 0.006
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 2220
Nucleic Acid Atoms 0
Heterogen Atoms 21
Solvent Atoms 180

Software

Software
Software Name Purpose
PHENIX refinement version: (phenix.refine: 1.8_1069)
HKL-2000 data reduction
SCALEPACK data scaling
PHENIX phasing