X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Details 0.02 M HEPES, PH=7.0, 5% GLYCEROL, 12% PEG 3350

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 53.17 α = 90
b = 71.06 β = 90
c = 72.27 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS (PILATUS) -- --
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ESRF BEAMLINE ID29 -- ESRF ID29

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.9 30 99.6 0.08 -- -- 5.4 -- 22112 -- 2.0 --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.9 2.0 -- -- -- -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
OTHER 1.9 30.0 -- -- -- 20946 1130 99.4 -- 0.1899 0.18767 0.23258 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.9 1.949 -- 82 1535 0.27 0.239 -- 99.69
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 41.111
Anisotropic B[1][1] -0.06
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] 1.6
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -1.54
RMS Deviations
Key Refinement Restraint Deviation
r_dihedral_angle_1_deg 5.946
r_bond_other_d 0.002
r_chiral_restr 0.104
r_dihedral_angle_4_deg 19.173
r_dihedral_angle_2_deg 40.193
r_angle_refined_deg 1.792
r_angle_other_deg 0.865
r_gen_planes_refined 0.009
r_bond_refined_d 0.017
r_mcbond_other 3.51
r_gen_planes_other 0.001
r_mcangle_it 5.0
r_dihedral_angle_3_deg 14.988
r_mcbond_it 3.517
r_scbond_it 5.203
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 2254
Nucleic Acid Atoms 0
Heterogen Atoms 10
Solvent Atoms 88

Software

Software
Software Name Purpose
REFMAC refinement version: 5.8.0049