5ALM

ligand complex structure of soluble epoxide hydrolase


X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 92.71 α = 90
b = 92.71 β = 90
c = 245.46 γ = 120
Symmetry
Space Group P 65 2 2

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD RIGAKU A200 MIRRORS --
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
ROTATING ANODE RIGAKU FR-E+ -- -- --

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2 50 98.8 0.07 -- -- 11.6 -- 42404 -- 0.0 33.44
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.0 2.05 97.7 1.02 -- 2.8 10.9 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.0 48.75 -- 0.0 -- 42403 2138 98.32 -- 0.2164 0.215 0.2435 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.0 2.05 -- 143 2901 0.3892 0.4234 -- 98.32
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 39.18
Anisotropic B[1][1] 0.9873
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] 0.9873
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -1.9745
RMS Deviations
Key Refinement Restraint Deviation
t_other_torsion 20.54
t_angle_deg 1.18
t_bond_d 0.009
t_omega_torsion 3.35
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 4323
Nucleic Acid Atoms 0
Heterogen Atoms 31
Solvent Atoms 338

Software

Software
Software Name Purpose
BUSTER refinement version: 2.11.1
XDS data reduction
SCALA data scaling