X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 96.37 α = 90
b = 96.37 β = 90
c = 57.81 γ = 120
Symmetry
Space Group P 65

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS 2M -- --
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON DIAMOND BEAMLINE I04-1 -- Diamond I04-1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.26 41.7 99.9 0.06 -- -- 10.1 -- 82450 -- 2.0 --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.26 1.29 99.1 1.04 -- 2.1 9.2 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.26 41.73 -- -- -- 78330 4085 99.93 -- 0.11846 0.11745 0.13797 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.26 1.293 -- 316 5719 0.222 0.227 -- 99.19
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 19.291
Anisotropic B[1][1] -0.11
Anisotropic B[1][2] -0.05
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] -0.11
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 0.35
RMS Deviations
Key Refinement Restraint Deviation
r_chiral_restr 0.08
r_gen_planes_refined 0.006
r_gen_planes_other 0.004
r_mcbond_other 2.549
r_scbond_it 4.427
r_mcangle_it 3.418
r_dihedral_angle_3_deg 13.305
r_sphericity_free 37.827
r_angle_other_deg 1.086
r_rigid_bond_restr 1.363
r_bond_other_d 0.004
r_sphericity_bonded 16.186
r_mcbond_it 2.681
r_dihedral_angle_2_deg 32.673
r_dihedral_angle_1_deg 5.855
r_angle_refined_deg 1.301
r_dihedral_angle_4_deg 15.399
r_bond_refined_d 0.008
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 1960
Nucleic Acid Atoms 0
Heterogen Atoms 20
Solvent Atoms 449

Software

Software
Software Name Purpose
REFMAC refinement version: 5.8.0073
MOLREP phasing