X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Details HEPES 0.1 M PH 7.5, NH4SO4 1.26 M

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 103.6 α = 90
b = 103.6 β = 90
c = 158.4 γ = 90
Symmetry
Space Group I 4

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS 6M -- 2011-12-16
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 -- SOLEIL PROXIMA 1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.75 43.34 99.5 0.04 -- -- 3.5 -- 152733 -- 1.1 0.2
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.74 1.81 98.9 0.44 -- 2.9 3.4 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.74 43.3 -- 1.1 -- 152733 7724 91.95 -- 0.1622 0.1608 0.1887 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.7499 1.7698 -- 240 4664 0.2979 0.3114 -- 88.0
X Ray Diffraction 1.7698 1.7906 -- 270 4737 0.2758 0.2921 -- 91.0
X Ray Diffraction 1.7906 1.8124 -- 226 4723 0.2592 0.2897 -- 90.0
X Ray Diffraction 1.8124 1.8354 -- 289 4569 0.2517 0.3077 -- 88.0
X Ray Diffraction 1.8354 1.8595 -- 220 4429 0.2383 0.2458 -- 83.0
X Ray Diffraction 1.8595 1.885 -- 237 4449 0.2213 0.234 -- 85.0
X Ray Diffraction 1.885 1.9119 -- 222 4946 0.2187 0.2546 -- 93.0
X Ray Diffraction 1.9119 1.9405 -- 248 4835 0.2027 0.2684 -- 93.0
X Ray Diffraction 1.9405 1.9708 -- 239 4962 0.1931 0.2355 -- 93.0
X Ray Diffraction 1.9708 2.0031 -- 285 4911 0.1924 0.2217 -- 93.0
X Ray Diffraction 2.0031 2.0377 -- 283 4842 0.1884 0.2435 -- 93.0
X Ray Diffraction 2.0377 2.0747 -- 292 4945 0.1766 0.2123 -- 93.0
X Ray Diffraction 2.0747 2.1146 -- 252 4901 0.1698 0.1992 -- 93.0
X Ray Diffraction 2.1146 2.1578 -- 277 4882 0.1683 0.2227 -- 93.0
X Ray Diffraction 2.1578 2.2047 -- 247 4788 0.1587 0.1996 -- 91.0
X Ray Diffraction 2.2047 2.256 -- 224 4515 0.1611 0.1815 -- 86.0
X Ray Diffraction 2.256 2.3124 -- 290 4495 0.1635 0.1853 -- 87.0
X Ray Diffraction 2.3124 2.3749 -- 251 4956 0.1575 0.1983 -- 95.0
X Ray Diffraction 2.3749 2.4448 -- 278 4970 0.1611 0.1917 -- 95.0
X Ray Diffraction 2.4448 2.5237 -- 278 4996 0.1539 0.2039 -- 95.0
X Ray Diffraction 2.5237 2.6139 -- 245 4935 0.155 0.1965 -- 94.0
X Ray Diffraction 2.6139 2.7185 -- 259 5017 0.1558 0.1796 -- 95.0
X Ray Diffraction 2.7185 2.8422 -- 294 5001 0.1641 0.1845 -- 95.0
X Ray Diffraction 2.8422 2.992 -- 245 4609 0.1688 0.2112 -- 88.0
X Ray Diffraction 2.992 3.1794 -- 263 4842 0.164 0.1876 -- 93.0
X Ray Diffraction 3.1794 3.4248 -- 288 5064 0.1505 0.1745 -- 96.0
X Ray Diffraction 3.4248 3.7693 -- 254 4976 0.133 0.1556 -- 95.0
X Ray Diffraction 3.7693 4.3143 -- 274 5130 0.1232 0.1411 -- 97.0
X Ray Diffraction 4.3143 5.4339 -- 205 4886 0.1321 0.1672 -- 93.0
X Ray Diffraction 5.4339 43.3579 -- 249 5034 0.1682 0.1638 -- 95.0
RMS Deviations
Key Refinement Restraint Deviation
f_bond_d 0.009
f_chiral_restr 0.044
f_angle_d 1.109
f_dihedral_angle_d 14.073
f_plane_restr 0.005
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 5119
Nucleic Acid Atoms 0
Heterogen Atoms 71
Solvent Atoms 571

Software

Software
Software Name Purpose
PHENIX refinement version: (PHENIX.REFINE)
XDS data reduction
SCALA data scaling
PHASER phasing