X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Details 10% PEG8000, 0.2M MAGNESIUM CHLORIDE, 0.1M HEPES PH7.0

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 49.78 α = 90
b = 148.69 β = 93.81
c = 91.58 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS 6M -- --
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON DIAMOND BEAMLINE I03 -- Diamond I03

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.7 41.3 98.7 0.07 -- -- 3.0 -- 36020 -- 0.0 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.7 91.38 -- -- -- 34240 1756 98.64 -- 0.22339 0.2214 0.26187 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.7 2.77 -- 122 2581 0.341 0.386 -- 98.97
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 60.778
Anisotropic B[1][1] 0.27
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] -1.55
Anisotropic B[2][2] 4.76
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -4.78
RMS Deviations
Key Refinement Restraint Deviation
r_scbond_it 1.956
r_mcbond_it 2.144
r_mcangle_it 3.634
r_dihedral_angle_2_deg 37.455
r_chiral_restr 0.063
r_mcbond_other 2.143
r_angle_refined_deg 1.137
r_dihedral_angle_4_deg 14.405
r_gen_planes_other 0.002
r_dihedral_angle_1_deg 5.559
r_gen_planes_refined 0.004
r_bond_other_d 0.003
r_dihedral_angle_3_deg 13.842
r_angle_other_deg 0.974
r_bond_refined_d 0.007
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 8993
Nucleic Acid Atoms 0
Heterogen Atoms 80
Solvent Atoms 0

Software

Software
Software Name Purpose
REFMAC refinement version: 5.8.0123
xia2 data reduction
Aimless data scaling