X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
pH 10.2
Details 12% (W/V) PEG 3350, 0.2 M MAGNESIUM CHLORIDE, 0.05 M CAPS, PH 10.2, 1%GLYCEROL

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 83.34 α = 90
b = 96.28 β = 90
c = 132.73 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 291
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD MARRESEARCH -- --
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON CLSI BEAMLINE 08ID-1 -- CLSI 08ID-1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.7 40 95.4 0.08 -- -- 7.9 -- 28812 -- 2.0 --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.7 2.75 94.2 0.42 -- 5.2 8.3 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.69 45.74 -- -- -- 27069 1445 93.88 -- 0.21438 0.2108 0.28062 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.689 2.759 -- 79 1712 0.262 0.375 -- 81.52
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 37.689
Anisotropic B[1][1] 0.65
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] -0.61
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -0.04
RMS Deviations
Key Refinement Restraint Deviation
r_bond_other_d 0.001
r_gen_planes_other 0.001
r_bond_refined_d 0.008
r_dihedral_angle_1_deg 6.56
r_angle_other_deg 0.801
r_gen_planes_refined 0.004
r_dihedral_angle_2_deg 34.842
r_angle_refined_deg 1.218
r_dihedral_angle_4_deg 16.252
r_chiral_restr 0.069
r_dihedral_angle_3_deg 14.592
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 9108
Nucleic Acid Atoms 0
Heterogen Atoms 32
Solvent Atoms 79

Software

Software
Software Name Purpose
REFMAC refinement version: 5.7.0029
HKL-2000 data reduction
HKL-2000 data scaling
PHASER phasing